SCIL

Sherbrooke Connectivity Imaging Lab

Journal papers

Challenges in diffusion MRI tractography – Lessons learned from international benchmark competitions

K. G. Schilling, A. Daducci, K. Maier-Hein, C. Poupon, J.-C. Houde, V. Nath, A. W. Anderson, B. A. Landman, and M. Descoteaux.

Magnetic Resonance Imaging, 57 , 2019

Test-Retest Reliability of Diffusion Measures Extracted Along White Matter Language Fiber Bundles Using HARDI-Based Tractography

M. Boukadi, K. Marcotte, C. Bedetti, J.-C. Houde, A. Desautels, S. Deslauriers-Gauthier, M. Chapleau, A. Bore, M. Descoteaux, and S. M. Brambati.

Frontiers in Neuroscience, 12 (January) , 2019

Brain white matter damage and its association with neuronal synchrony during sleep

E. Sanchez, H. El-Khatib, C. Arbour, C. Bedetti, H. Blais, K. Marcotte, A.-A. Baril, M. Descoteaux, D. Gilbert, J. Carrier, and N. Gosselin.

Brain, 2019

Bundle-specific tractography with incorporated anatomical and orientational priors

F. Rheault, E. St-Onge, J. Sidhu, K. Maier-Hein, N. Tzourio-Mazoyer, L. Petit, and M. Descoteaux.

NeuroImage, 186 (October 2018) , 2019

Limits to anatomical accuracy of diffusion tractography using modern approaches

K. G. Schilling, V. Nath, C. Hansen, P. Parvathaneni, J. Blaber, Y. Gao, P. Neher, D. B. Aydogan, Y. Shi, M. Ocampo-Pineda, S. Schiavi, A. Daducci, G. Girard, M. Barakovic, J. Rafael-Patino, D. Romascano, G. Rensonnet, M. Pizzolato, A. Bates, E. Fischi, J. P. Thiran, E. J. Canales-Rodriguez, C. Huang, H. Zhu, L. Zhong, R. Cabeen, A. W. Toga, F. Rheault, G. Theaud, J. C. Houde, J. Sidhu, M. Chamberland, C. F. Westin, T. B. Dyrby, R. Verma, Y. Rathi, M. O. Irfanoglu, C. Thomas, C. Pierpaoli, M. Descoteaux, A. W. Anderson, and B. A. Landman.

NeuroImage, 185 (October 2018) , 2019

Topological principles and developmental algorithms might refine diffusion tractograph

Innocenti, G. M., Dyrby, T. B., Girard, Gabriel, St-Onge, Etienne, Thiran, Jean-Philippe, Daducci, Alessandro, Descoteaux, and Maxime.

Brain Structure and Function, 2018

The Canadian Dementia Imaging Protocol: Harmonizing National Cohorts

S. Duchesne, I. Chouinard, O. Potvin, V. S. Fonov, A. Khademi, R. Bartha, P. Bellec, D. L. Collins, M. Descoteaux, R. Hoge, C. R. McCreary, J. Ramirez, C. J. Scott, E. E. Smith, S. C. Strother, and S. E. Black.

Journal of Magnetic Resonance Imaging, 2018

Data Descriptor: In-vivo probabilistic atlas of human thalamic nuclei based on diffusion- weighted magnetic resonance imaging

E. Najdenovska, Y. Aleman-Gomez, G. Battistella, M. Descoteaux, P. Hagmann, S. Jacquemont, P. Maeder, J.-P. Thiran, E. Fornari, and M. B. Cuadra.

Scientific Data, 5 (October) , 2018

A population-based atlas of the human pyramidal tract in 410 healthy participants

Q. Chenot, N. Tzourio-Mazoyer, F. Rheault, M. Descoteaux, F. Crivello, L. Zago, E. Mellet, G. Jobard, M. Joliot, B. Mazoyer, and L. Petit.

Brain Structure and Function, 0 (0) , 2018

Bundle-specific fornix reconstruction for dual-tracer PET-tractometry

F. Rheault, M. Roy, S. Cunnane, and M. Descoteaux.

bioRxiv, 2018

Fully automated dual-resolution serial optical coherence tomography aimed at diffusion MRI validation in whole mouse brains

J. Lefebvre, P. Delafontaine-Martel, P. Pouliot, H. Girouard, and M. Descoteaux.

Neurophotonics, 5 (04) , 2018

Cortical thickness analysis in operculo-insular epilepsy

S. Obaid, A. Tucholka, J. Ghaziri, P. M. Jodoin, F. Morency, M. Descoteaux, A. Bouthillier, and D. K. Nguyen.

NeuroImage: Clinical, 19 (May) , 2018

Subcortical structural connectivity of insular subregions

J. Ghaziri, A. Tucholka, G. Girard, O. Boucher, J. C. Houde, M. Descoteaux, S. Obaid, G. Gilbert, I. Rouleau, and D. K. Nguyen.

Scientific Reports, 8 (1) , 2018

White matter degeneration profile in the cognitive cortico-subcortical tracts in Parkinson's disease

A. Hanganu, J.-C. Houde, V. S. Fonov, C. Degroot, B. Mejia-Constain, A.-L. Lafontaine, V. Soland, S. Chouinard, L. D. Collins, M. Descoteaux, and O. Monchi.

Movement Disorders, 03307 (7) , 2018

Mapping population-based structural connectomes

Z. Zhang, M. Descoteaux, J. Zhang, G. Girard, M. Chamberland, D. Dunson, A. Srivastava, and H. Zhu.

NeuroImage, 172 (December) , 2018

Diffusion MRI monitoring of specific structures in the irradiated rat brain

J. Constanzo, M. Dumont, R. Lebel, L. Tremblay, K. Whittingstall, L. Masson-Côté, S. Geha, P. Sarret, M. Lepage, B. Paquette, and M. Descoteaux.

Magnetic Resonance in Medicine, 80 (4) , 2018

The role of the arcuate and middle longitudinal fasciculi in speech perception in noise in adulthood

P. Tremblay, M. Perron, I. Deschamps, D. Kennedy-Higgins, J.-C. Houde, A. S. Dick, and M. Descoteaux.

Human Brain Mapping, 2018

Stimulus-evoked changes in cerebral vessel diameter: A study in healthy humans

A. Bizeau, G. Gilbert, M. Bernier, M. T. Huynh, C. Bocti, M. Descoteaux, and K. Whittingstall.

Journal of Cerebral Blood Flow & Metabolism, 38 (3) , 2018

Surface-enhanced tractography (SET)

E. St-Onge, A. Daducci, G. Girard, and M. Descoteaux.

NeuroImage, 169 , 2018

High-resolution 3D diffusion tensor MRI of anesthetized rhesus macaque brain at 3T

S. Tounekti, T. Troalen, Y. Bihan-Poudec, M. Froesel, F. Lamberton, V. Ozenne, J. Cléry, N. Richard, M. Descoteaux, S. B. Hamed, and B. Hiba.

NeuroImage, 181 (March) , 2018

Diffusion MRI fiber tractography of the brain

B. Jeurissen, M. Descoteaux, S. Mori, and A. Leemans.

NMR in Biomedicine, 2017

On the origin of individual functional connectivity variability: The role of white matter architecture

M. Chamberland, G. Girard, M. Bernier, D. Fortin, M. Descoteaux, and K. Whittingstall.

Brain Connectivity, 2017

AxTract: Toward microstructure informed tractography

G. Girard, A. Daducci, L. Petit, J.-P. Thiran, K. Whittingstall, R. Deriche, D. Wassermann, and M. Descoteaux.

Human Brain Mapping, in press , 2017

Recognition of white matter bundles using local and global streamline-based registration and clustering

E. Garyfallidis, M.-A. Côté, F. Rheault, J. Sidhu, J. Hau, L. Petit, D. Fortin, S. Cunanne, and M. Descoteaux.

NeuroImage, July , 2017

Whole mouse brain imaging using optical coherence tomography: reconstruction, normalization, segmentation, and comparison with diffusion MRI

J. Lefebvre, A. Castonguay, P. Pouliot, M. Descoteaux, and F. Lesage.

Neurophotonics, 4 (4) , 2017

Visualization, Interaction and Tractometry: Dealing with Millions of Streamlines from Diffusion MRI Tractography

F. Rheault, J.-C. Houde, and M. Descoteaux.

Frontiers in Neuroinformatics, 11 , 2017

The role of the pallidothalamic fibre tracts in deep brain stimulation for dystonia: A diffusion MRI tractography study

V. E. Rozanski, N. M. d. Silva, S.-A. Ahmadi, J. Mehrkens, J. d. S. Cunha, J.-C. Houde, C. Vollmar, K. Bötzel, and M. Descoteaux.

Human Brain Mapping, 38 (3) , 2017

Application of polymer sensitive MRI sequence to localization of EEG electrodes

R. Butler, G. Gilbert, M. Descoteaux, P.-M. Bernier, and K. Whittingstall.

Journal of Neuroscience Methods, 278 , 2017

Active delineation of Meyer's loop using oriented priors through MAGNEtic tractography (MAGNET)

M. Chamberland, B. Scherrer, S. P. Prabhu, J. Madsen, D. Fortin, K. Whittingstall, M. Descoteaux, and S. K. Warfield.

Human Brain Mapping, 38 (1) , 2017

Fiberweb : diffusion visualization and processing in the browser

L.-P. Ledoux, F. C. Morency, M. Cousineau, J.-C. Houde, K. Whittingstall, and M. Descoteaux.

Frontiers in Neuroinformatics, 11 , 2017

Fiber tractography using machine learning

P. F. Neher, M.-A. Côté, J.-C. Houde, M. Descoteaux, and K. H. Maier-Hein.

NeuroImage, 158 (September) , 2017

3D-SSF: A bio-inspired approach for dynamic multi-subject clustering of white matter tracts

A. Chekir, S. Hassas, M. Descoteaux, M. Côté, E. Garyfallidis, and F. Oulebsir-Boumghar.

Computers in Biology and Medicine, 83 , 2017

Improving the evaluation of cardiac function in rats at 7T with denoising filters: A comparison study

B. Tricot, M. Descoteaux, M. Dumont, F. Chagnon, L. Tremblay, A. Carpentier, O. Lesur, M. Lepage, and A. Lalande.

BMC Medical Imaging, 17 (1) , 2017

A test-retest study on Parkinson's PPMI dataset yields statistically significant white matter fascicles

M. Cousineau, P. M. Jodoin, F. C. Morency, V. Rozanski, M. Grand'Maison, B. J. Bedell, and M. Descoteaux.

NeuroImage: Clinical, 16 (July) , 2017

The challenge of mapping the human connectome based on diffusion tractography

K. H. Maier-Hein, P. Neher, J. Christophe, M.-A. Cote, E. Garyfallidis, J. Zhong, M. Chamberland, F.-C. Yeh, Y. C. Lin, Q. Ji, W. E. Reddick, J. O. Glass, D. Q. Chen, Y. Feng, C. Gao, Y. Wu, J. Ma, H. Renjie, Q. Li, C.-F. Westin, S. Deslauriers-Gauthier, J. O. O. Gonzalez, M. Paquette, S. St-Jean, G. Girard, F. Rheault, J. Sidhu, C. M. W. Tax, F. Guo, H. Y. Mesri, S. David, M. Froeling, A. M. Heemskerk, A. Leemans, A. Bore, B. Pinsard, C. Bedetti, M. Desrosiers, S. Brambati, J. Doyon, A. Sarica, R. Vasta, A. Cerasa, A. Quattrone, J. Yeatman, A. R. Khan, W. Hodges, S. Alexander, D. Romascano, M. Barakovic, A. Auria, O. Esteban, A. Lemkaddem, J.-P. Thiran, H. E. Cetingul, B. L. Odry, B. Mailhe, M. Nadar, F. Pizzagalli, G. Prasad, J. Villalon-Reina, J. Galvis, P. Thompson, F. Requejo, P. Laguna, L. Lacerda, R. Barrett, F. Dell'Acqua, M. Catani, L. Petit, E. Caruyer, A. Daducci, T. Dyrby, T. Holland-Letz, C. Hilgetag, B. Stieltjes, and M. Descoteaux.

Nature communications, in press , 2017

Revisiting the human uncinate fasciculus, its subcomponents and asymmetries with stem-based tractography and microdissection validation

J. Hau, S. Sarubbo, J. C. Houde, F. Corsini, G. Girard, C. Deledalle, F. Crivello, L. Zago, E. Mellet, G. Jobard, M. Joliot, B. Mazoyer, N. Tzourio-Mazoyer, M. Descoteaux, and L. Petit.

Brain Structure and Function, 222 (4) , 2017

Optimal DSI reconstruction parameter recommendations: Better ODFs and better connectivity

M. Paquette, G. Gilbert, and M. Descoteaux.

NeuroImage, 142 , 2016

New insights in the homotopic and heterotopic connectivity of the frontal portion of the human corpus callosum revealed by microdissection and diffusion tractography

A. D. Benedictis, L. Petit, M. Descoteaux, C. E. Marras, M. Barbareschi, F. Corsini, M. Dallabona, F. Chioffi, and S. Sarubbo.

Human Brain Mapping, 37 (12) , 2016

Microstructure Informed Tractography: Pitfalls and Open Challenges

A. Daducci, A. D. Palú, M. Descoteaux, and J.-P. Thiran.

Frontiers in Neuroscience, 10 , 2016

Non Local Spatial and Angular Matching : Enabling higher spatial resolution diffusion MRI datasets through adaptive denoising

S. St-Jean, P. Coupé, and M. Descoteaux.

Medical Image Analysis, 32 , 2016

The application of a new sampling theorem for non-bandlimited signals on the sphere: Improving the recovery of crossing fibers for low b-value acquisitions

S. Deslauriers-Gauthier, P. Marziliano, M. Paquette, and M. Descoteaux.

Medical Image Analysis, 30 , 2016

Semi-automatic segmentation of optic radiations and LGN, and their relationship to EEG alpha waves

E. Renauld, M. Descoteaux, M. Bernier, E. Garyfallidis, and K. Whittingstall.

PLoS ONE, 11 (7) , 2016

On the computation of integrals over fixed-size rectangles of arbitrary dimension

O. Ocegueda, O. Dalmau, E. Garyfallidis, M. Descoteaux, and M. Rivera.

Pattern Recognition Letters, 79 , 2016

Tractography-based connectomes are dominated by false-positive connections

K. Maier-Hein, P. Neher, J.-C. Houde, M.-A. Cote, E. Garyfallidis, J. Zhong, M. Chamberland, F.-C. Yeh, Y. C. Lin, Q. Ji, W. E. Reddick, J. O. Glass, D. Q. Chen, Y. Feng, C. Gao, Y. Wu, J. Ma, H. Renjie, Q. Li, C.-F. Westin, S. Deslauriers-Gauthier, J. O. O. Gonzalez, M. Paquette, S. St-Jean, G. Girard, F. Rheault, J. Sidhu, C. M. W. Tax, F. Guo, H. Y. Mesri, S. David, M. Froeling, A. M. Heemskerk, A. Leemans, A. Bore, B. Pinsard, C. Bedetti, M. Desrosiers, S. Brambati, J. Doyon, A. Sarica, R. Vasta, A. Cerasa, A. Quattrone, J. Yeatman, A. R. Khan, W. Hodges, S. Alexander, D. Romascano, M. Barakovic, A. Auria, O. Esteban, A. Lemkaddem, J.-P. Thiran, H. E. Cetingul, B. L. Odry, B. Mailhe, M. Nadar, F. Pizzagalli, G. Prasad, J. Villalon-Reina, J. Galvis, P. Thompson, F. Requejo, P. Laguna, L. Lacerda, R. Barrett, F. Dell'Acqua, M. Catani, L. Petit, E. Caruyer, A. Daducci, T. Dyrby, T. Holland-Letz, C. Hilgetag, B. Stieltjes, and M. Descoteaux.

bioRxiv, 2016

The Corticocortical Structural Connectivity of the Human Insula

J. Ghaziri, A. Tucholka, G. Girard, J.-C. Houde, O. Boucher, G. Gilbert, M. Descoteaux, S. Lippe, P. Rainville, and D. K. Nguyen.

Cerebral Cortex, December , 2015

Sparse Reconstruction Challenge for diffusion MRI: Validation on a physical phantom to determine which acquisition scheme and analysis method to use?

L. Ning, F. Laun, Y. Gur, E. V. DiBella, S. Deslauriers-Gauthier, T. Megherbi, A. Ghosh, M. Zucchelli, G. Menegaz, R. Fick, S. St-Jean, M. Paquette, R. Aranda, M. Descoteaux, R. Deriche, L. O'Donnell, and Y. Rathi.

Medical Image Analysis, 26 (1) , 2015

Strengths and weaknesses of state of the art fiber tractography pipelines - A comprehensive in-vivo and phantom evaluation study using Tractometer.

P. F. Neher, M. Descoteaux, J.-C. Houde, B. Stieltjes, and K. H. Maier-Hein.

Medical image analysis, 26 (1) , 2015

Seeing More by Showing Less: Orientation-Dependent Transparency Rendering for Fiber Tractography Visualization

C. M. W. Tax, M. Chamberland, M. van Stralen, M. A. Viergever, K. Whittingstall, D. Fortin, M. Descoteaux, and A. Leemans.

PLOS ONE, 10 (10) , 2015

3D interactive tractography-informed resting-state fMRI connectivity

M. Chamberland, M. Bernier, D. Fortin, K. Whittingstall, and M. Descoteaux.

Frontiers in Neuroscience, 9 , 2015

Robust and efficient linear registration of white-matter fascicles in the space of streamlines.

E. Garyfallidis, O. Ocegueda, D. Wassermann, and M. Descoteaux.

NeuroImage, 117 , 2015

A new compression format for fiber tracking datasets

C. Presseau, P.-M. Jodoin, J.-C. Houde, and M. Descoteaux.

NeuroImage, 2015

Congenital mirror movements: lack of decussation of pyramids.

P. Brandao, C. Jovem, J. P. Brasil-Neto, C. Tomaz, M. Descoteaux, and N. Allam.

Brain : a journal of neurology, 137 (Pt 8) , 2014

Towards quantitative connectivity analysis: reducing tractography biases.

G. Girard, K. Whittingstall, R. Deriche, and M. Descoteaux.

NeuroImage, 98 (1) , 2014

Regional variations in vascular density correlate with resting-state and task-evoked blood oxygen level-dependent signal amplitude.

N. Vigneau-Roy, M. Bernier, M. Descoteaux, and K. Whittingstall.

Human brain mapping, 35 (5) , 2014

Structural network underlying visuospatial imagery in humans.

K. Whittingstall, M. Bernier, J.-C. Houde, D. Fortin, and M. Descoteaux.

Cortex, 56 (July) , 2014

Comparison of sampling strategies and sparsifying transforms to improve compressed sensing diffusion spectrum imaging.

M. Paquette, S. Merlet, G. Gilbert, R. Deriche, and M. Descoteaux.

Magnetic resonance in medicine, 73 (1) , 2014

Real-time multi-peak tractography for instantaneous connectivity display.

M. Chamberland, K. Whittingstall, D. Fortin, D. Mathieu, and M. Descoteaux.

Frontiers in neuroinformatics, 8 , 2014

Dipy, a library for the analysis of diffusion MRI data

E. Garyfallidis, M. Brett, B. Amirbekian, A. Rokem, S. V. D. Walt, M. Descoteaux, and I. Nimmo-Smith.

Frontiers in Neuroinformatics, 8 (8) , 2014

Using fMRI non-local means denoising to uncover activation in sub-cortical structures at 1.5 T for guided HARDI tractography

M. Bernier, M. Chamberland, J.-C. Houde, M. Descoteaux, and K. Whittingstall.

Frontiers in Human Neuroscience, 8 , 2014

Quantitative comparison of reconstruction methods for intra-voxel fiber recovery from diffusion MRI

A. Daducci, E. Canales-Rodriguez, M. Descoteaux, Y. Gur, M. Mani, S. Merlet, A. Ramirez-Manzanares, P. Rodrigues, M. Reisert, and F. Sepehrband.

IEEE Transactions on Medical Imaging, 33 (2) , 2014

Neurocognitive deficits and diffusion MR imaging abnormalities in a case of adult-onset autosomal dominant leukodystrophy

R. Laforce, M. Roy, M. Descoteaux, C. Berthelot, and J.-P. Bouchard.

Translational Neuroscience, 4 (4) , 2013

Denoising and fast diffusion imaging with physically constrained sparse dictionary learning

A. Gramfort, C. Poupon, and M. Descoteaux.

Medical Image Analysis, null (null) , 2013

Tractometer: Towards validation of tractography pipelines.

M.-A. Côté, G. Girard, A. Boré, E. Garyfallidis, J.-C. Houde, and M. Descoteaux.

Medical image analysis, 17 (7) , 2013

A Dual Tracer PET-MRI Protocol for the Quantitative Measure of Regional Brain Energy Substrates Uptake in the Rat.

M. Roy, S. Nugent, S. Tremblay, M. Descoteaux, J.-F. Beaudoin, L. Tremblay, R. Lecomte, and S. C. Cunnane.

Journal of visualized experiments : JoVE, 2013

Collaborative patch-based super-resolution for diffusion-weighted images

P. Coupé, J. V. Manjón, M. Chamberland, M. Descoteaux, and B. Hiba.

NeuroImage, 83 , 2013

Tractography in the study of the human brain: a neurosurgical perspective.

D. Fortin, C. Aubin-Lemay, A. Boré, G. Girard, J.-C. Houde, K. Whittingstall, and M. Descoteaux.

The Canadian journal of neurological sciences. Le journal canadien des sciences neurologiques, 39 (6) , 2012

The ketogenic diet increases brain glucose and ketone uptake in aged rats: A dual tracer PET and volumetric MRI study.

M. Roy, S. Nugent, J. Tremblay-Mercier, S. Tremblay, A. Courchesne-Loyer, J.-F. Beaudoin, L. Tremblay, M. Descoteaux, R. Lecomte, and S. C. Cunnane.

Brain research, 2012

De l'estimation locale par imagerie q-ball à la tractographie des croisements de fibres

M. Descoteaux.

TSI-Technique et Science Informatiques, 3 , 2012

Quantitative Evaluation of 10 Tractography Algorithms on a Realistic Diffusion MR Phantom.

P. Fillard, M. Descoteaux, A. Goh, S. Gouttard, B. Jeurissen, J. Malcolm, A. Ramirez-Manzanares, M. Reisert, K. Sakaie, F. Tensaouti, T. Yo, J.-F. Mangin, and C. Poupon.

NeuroImage, 56 (1) , 2011

Impact of outliers on diffusion tensor and Q-ball imaging: Clinical implications and correction strategies

M. A. Sharman, J. Cohen-Adad, M. Descoteaux, A. Messé, H. Benali, and S. Lehericy.

Journal of Magnetic Resonance Imaging, 33 (6) , 2011

Quality assessment of high angular resolution diffusion imaging data using bootstrap on Q-ball reconstruction

J. Cohen-Adad, M. Descoteaux, and L. L. Wald.

Journal of Magnetic Resonance Imaging, 33 (5) , 2011

Multiple q-shell diffusion propagator imaging

M. Descoteaux, R. Deriche, D. L. Bihan, J.-F. Mangin, and C. Poupon.

Medical Image Analysis, 15 (4) , 2011

Robust clustering of massive tractography datasets.

P. Guevara, C. Poupon, D. Rivière, Y. Cointepas, M. Descoteaux, B. Thirion, and J.-F. Mangin.

NeuroImage, 54 (3) , 2010

Spherical wavelet transform for ODF sharpening

I. Kezele, M. Descoteaux, C. Poupon, F. Poupon, and J.-F. Mangin.

Medical Image Analysis, 14 (3) , 2010

Optimal Real-Time Q-Ball Imaging Using Regularized Kalman Filtering with Incremental Orientation Sets.

R. Deriche, J. Calder, and M. Descoteaux.

Medical Image Analysis, 13 (4) , 2009

Deterministic and probabilistic tractography based on complex fibre orientation distributions.

M. Descoteaux, R. Deriche, T. R. Knösche, and A. Anwander.

IEEE transactions on medical imaging, 28 (2) , 2009

Mathematical Methods for Diffusion MRI Processing

C. Lenglet, J. S. W. Campbell, M. Descoteaux, G. Haro, P. Savadjiev, D. Wassermann, A. Anwander, R. Deriche, G. B. Pike, G. Sapiro, K. Siddiqi, and P. Thompson..

NeuroImage, 45 (1) , 2009

Diffusion Abnormalities in the Primary Sensorimotor Pathways in Writer's Cramp.

C. Delmaire, M. Vidailhet, D. Wassermann, M. Descoteaux, R. Valabregue, F. Bourdin, C. Lenglet, S. Sangla, A. Terrier, R. Deriche, and S. Lehéricy..

Archives of Neurology, 66 (4) , 2009

High Angular Resolution Diffusion MRI Segmentation Using Region-Based Statistical Surface Evolution

M. Descoteaux and R. Deriche.

Journal of Mathetical Imaging in Vision, special issue on Mathematics in Image Analysis, 33 (2) , 2009

A geometric flow for segmenting vasculature in proton-density weighted MRI.

M. Descoteaux, D. L. Collins, and K. Siddiqi.

Medical image analysis, 12 (4) , 2008

High Angular Resolution Diffusion MRI Segmentation Using Region-Based Statistical Surface Evolution

M. Descoteaux and R. Deriche.

Journal of Mathematical Imaging and Vision, 33 (2) , 2008

Diffusion Maps Clustering for Magnetic Resonance Q-Ball Imaging Segmentation

D. Wassermann, M. Descoteaux, and R. Deriche.

International Journal on Biomedical Imaging, special issue on Recent Advances in Neuroimaging Methodology, 2008 , 2008

Detection of multiple pathways in the spinal cord using q-ball imaging

J. Cohen-Adad, M. Descoteaux, S. Rossignol, R. Hoge, R. Deriche, and H. Benali.

NeuroImage, 42 (2) , 2008

A Multi-Scale Geometric Flow for Segmenting Vasculature in MRI: Theory and Validation.

M. Descoteaux, L. Collins, and K. Siddiqi.

Medical Image Analysis, 12 (4) , 2008

Labeling of ambiguous sub-voxel fibre bundle configurations in high angular resolution diffusion MRI

P. Savadjiev, J. S. W. Campbell, M. Descoteaux, R. Deriche, G. B. Pike, and K. Siddiqi.

NeuroImage, 41 (1) , 2008

Mapping neuronal fiber crossings in the human brain

M. Descoteaux.

SPIE Newsroom, 2008

Image Reconstruction and Processing of High Angular Resolution Diffusion Imaging

M. Descoteaux and R. Deriche.

SPIE Newsroom, 2008

Validation of vessel-based registration for correction of brain shift

I. Reinertsen, M. Descoteaux, K. Siddiqi, and D. L. Collins.

Medical Image Analysis, 11 (4) , 2007

Regularized, Fast, and Robust Analytical Q-Ball Imaging

M. Descoteaux, E. Angelino, S. Fitzgibbons, and R. Deriche.

Magnetic Resonance in Medicine, 58 (3) , 2007

Bone enhancement filtering: application to sinus bone segmentation and simulation of pituitary surgery.

M. Descoteaux, M. Audette, K. Chinzei, and K. Siddiqi.

Computer aided surgery : official journal of the International Society for Computer Aided Surgery, 11 (5) , 2006

Apparent diffusion coefficients from high angular resolution diffusion imaging: estimation and applications.

M. Descoteaux, E. Angelino, S. Fitzgibbons, and R. Deriche.

Magnetic resonance in medicine : official journal of the Society of Magnetic Resonance in Medicine / Society of Magnetic Resonance in Medicine, 56 (2) , 2006

Books and book chapters

Diffusion-weighted MRI

M. Descoteaux and C. Poupon.

Comprehensive Biomedical Physics , Elsevier, 2014, ISBN 9780444536334

Medical Image Computing and Computer-Assisted Intervention – MICCAI 2010

T. Jiang, N. Navab, J. Pluim, M. Viergever, P. Guevara, C. Poupon, D. Rivière, Y. Cointepas, L. Marrakchi, M. Descoteaux, P. Fillard, B. Thirion, and J.-F. Mangin.

Springer Berlin Heidelberg, 2010, ISBN 978-3-642-15704-2

High Angular Resolution Diffusion Imaging (HARDI)

M. Descoteaux.

Wiley Encyclopedia of Electrical and Electronics Engineering (EEEE) , John Wiley & Sons, Inc., 2015, ISBN 9780471346081

From Local Q-Ball Estimation to Fibre Crossing Tractography

M. Descoteaux and R. Deriche.

Handbook of Biomedical Imaging , 2015

Visualization of Diffusion Propagator and Multiple Parameter Diffusion Signal

O. Vaillancourt, M. Chamberland, J.-C. Houde, and M. Descoteaux.

Visualization and Processing of Higher Order Descriptors for Multi-Valued Data , 2015

Contextual diffusion image post-processing aids clinical applications

V. Prckovska, M. Andorrà, P. Villoslada, E. Martinez-Heras, R. Duits, D. Fortin, P. Rodrigues, and M. Descoteaux.

Visualization and Processing of Higher Order Descriptors for Multi-Valued Data , Springer, 2015, ISBN 978-3-319-15089-5

Conference proceedings

Edema-informed anatomically constrained particle filter tractography

S. Deslauriers-gauthier, D. Parker, F. Rheault, R. Deriche, S. Brem, R. Verma, and M. Descoteaux.

Medical Image Computing and Computed-Assisted Intervention (MICCAI) , 2018

Medical Image Computing and Computer Assisted Intervention - {MICCAI} 2017 - 20th International Conference, Quebec City, QC, Canada, September 11-13, 2017, Proceedings, Part {III}

M. Descoteaux, L. Maier-Hein, A. M. Franz, P. Jannin, D. L. Collins, and S. Duchesne.

Springer, 2017, ISBN 978-3-319-66178-0

Medical Image Computing and Computer Assisted Intervention - {MICCAI} 2017 - 20th International Conference, Quebec City, QC, Canada, September 11-13, 2017, Proceedings, Part {II}

M. Descoteaux, L. Maier-Hein, A. M. Franz, P. Jannin, D. L. Collins, and S. Duchesne.

Springer, 2017

Medical Image Computing and Computer Assisted Intervention - {MICCAI} 2017 - 20th International Conference, Quebec City, QC, Canada, September 11-13, 2017, Proceedings, Part {I}

M. Descoteaux, L. Maier-Hein, A. M. Franz, P. Jannin, D. L. Collins, and S. Duchesne.

Springer, 2017

Bundle Specific Tractography (BST)

F. Rheault, E. St-Onge, L. Petit, and M. Descoteaux.

Computational Diffusion MRI (MICCAI 2017) , 2017

NODDI-SH: a computational efficient NODDI extension for fODF estimation in diffusion MRI

M. Zucchelli, M. Descoteaux, and G. Menegaz.

Computational Diffusion MRI (MICCAI 2017) , 2017

Interactive Computation and Visualization of Structural Connectomes in Real-Time

M. Chamberland, L. Gray, M. Descoteaux, and D. Jones.

Connectomics in NeuroImaging (MICCAI 2017) , Springer, 2017

Inference and Visualization of Information Flow in the Visual Pathway Using dMRI and EEG

S. Deslauriers-Gauthier, J.-M. Lina, R. Butler, P.-M. Bernier, K. Whittingstall, R. Deriche, and M. Descoteaux.

Medical Image Computing and Computer Assisted Interventions (MICCAI) , 2017

Learn to Track: Deep Learning for Tractography

P. Poulin, M.-A. Côté, L. Petit, P. Neher, K. Maier-Hein, H. Larochelle, and M. Descoteaux.

Medical Image Computing and Computer Assisted Interventions (MICCAI) , Elsevier, 2017

AxTract: Microstructure-Driven Tractography Based on the Ensemble Average Propagator

G. Girard, R. Fick, M. Descoteaux, R. Deriche, and D. Wasserm.

Information Processing in Medical Imaging (IPMI) , Springer, 2015

Simultaneously probing functional and structural brain connectivity in real-time: Fibernavigator: An interactive tool for brain visualization

M. Chamberland, K. Whittingstall, and D. Forti.

Neurotechnix , 2014

Constrained spherical deconvolution on signal and ODF values

E. Garyfallidis, S. St-jean, M. Paquette, P. Coupé, and M. Descoteaux.

HARDI Reconstruction Challenge, International Symposium on Biomedical Imaging , 2013

Neurosurgical tracking at the Sherbrooke Connectivity Imaging Lab ( SCIL )

G. Girard, M. Chamberland, J.-C. Houde, D. Fortin, and M. Descoteaux.

International Conference on Medical Image Computing and Computer Assisted Intervention (MICCAI'12) - DTI Challenge Workshop , 2012

Anatomical Tissue Probability Priors for Tractography

G. Girard and M. Descoteaux.

Computationnal diffusion MRI (CDMRI) workshop held at MICCAI , 2012

Local Water Diffusion Phenomenon Clustering From High Angular Resolution Diffusion Imaging (HARDI)

R. Giot, C. Charrier, and M. Descoteaux.

21st International Conference on Pattern Recognition (ICPR) , 2012

Tractography via the Ensemble Average Propagator in diffusion MRI

S. Merlet, A.-C. Philppe, R. Deriche, and M. Descoteaux.

Medical Image Computing and Computer Assisted Intervention (MICCAI) , 2012

Sparse DSI : Learning DSI structure for denoising and fast imaging

A. Gramfort, C. Poupon, and M. Descoteaux.

Medical Image Computing and Computer Assisted Intervention (MICCAI) , 2012

Tractometer : Online evaluation system for tractography

M.-A. Côté, A. Boré, G. Girard, J.-C. Houde, and M. Descoteaux.

Medical Image Computing and Computer Assisted Intervention (MICCAI) , 2012

The parallel Kalman Filter: An efficient tool to deal with real-time non central Chi noise of HARDI data

V. Brion, O. Riff, M. Descoteaux, J.-F. Mangin, D. L. Bihan, C. Poupon, and F. Poupo.

International Symposium in Biomedical Imaging (ISBI) , 2012

A Multivariate Group-wise Genetic Analysis of White Matter Integrity using Orientation Distribution Functions

C. Brun, M. Descoteaux, and N. Lepore.

Computational Diffusion MRI workshop at MICCAI , 2010

Real-time Rician noise correction applied to real-time HARDI and HYDI

V. Brion, I. Kezele, O. Riff, M. Descoteaux, J.-F. Mangin, C. Poupon, and F. Poupon.

Computational Diffusion MRI workshop at MICCAI , 2010

Inference of a HARDI Fiber Bundle Atlas Using a Two-Level Clustering Strategy

P. Guevara, C. Poupon, D. Riviere, Y. Cointepas, L. Marrakchi, M. Descoteaux, P. Fillard, B. Thirion, and J.-F. Mangin.

MICCAI , 2010

Improving high-resolution Q-Ball imaging with a head insert gradient: Bootstrap and SNR analysis

J. Cohen-Adad, J. A. McNab, T. Benner, M. Descoteaux, A. Mareyam, V. J. Wedeen, and L. L. Wald.

Proceedings of the International Society for Magnetic Resonance in Medicine , 2010

A Fiber Navigator for Neurosurgical Planning (NeuroPlanningNavigator)

O. Vaillancourt, A. Boré, G. Girard, and M. Descoteaux.

IEEE Visualization , 2010

Quantify Brain Connectivity: a Comparative Study of Tractography

T.-S. Yo, A. Anwander, M. Descoteaux, P. Fillard, C. Poupon, and T. R. Knosche.

Medical Image Computing and Computer-Assisted Intervention (MICCAI'09) , 2009

Diffusion Propagator Imaging : Using Laplace ' s Equation and Multiple Shell Acquisitions to Reconstruct the Diffusion Propagator

M. Descoteaux, R. Deriche, and D. L. Bihan.

Information Processing in Medical Imaging , 2009

Fast classification scheme for HARDI data simplification

V. Prckovska, A. Vilanova, B. H. Romeny, C. Poupon, and M. Descoteaux.

Macedonian Society on Information and Communication Technologies , 2009

Brain connectivity using geodesics in HARDI

M. Péchaud, M. Descoteaux, and R. Kerive.

Medical image computing and computer-assisted intervention : MICCAI , 2009

Riemannian Framework for Estimating Symmetric Positive Definite 4th Order Diffusion Tensors

A. Ghosh, M. Descoteaux, and R. Deriche.

Medical Image Computing and Computer-Assisted Intervention (MICCAI) , 2008

Multiresolution decomposition of HARDI and ODF profiles using spherical wavelets

I. Kezele, M. Descoteaux, C. Poupon, P. Abrial, F. Poupon, and J.-F. Mangin.

Computational Diffusion MRI workshop, MICCAI 08 , 2008

Impact of Rician Adapted Non-Local Means Filtering on HARDI

M. Descoteaux, N. Wiest-Daesslé, S. Prima, C. Barillot, and R. Deriche.

Medical Image Computing and Computer-Assisted Intervention (MICCAI) , 2008

Detection of Multiple Pathways in the Spinal Cord White Matter Using Q-Ball Imaging

J. Cohen-Adad, M. Descoteaux, S. Rossignol, R. Hoge, R. Deriche, and H. Benali.

5th IEEE International Symposium on Biomedical Imaging : From Nano to Macro (ISBI'08) , 2008

Using tensors and polynomials system solvers to follow fibers in the brain

A. Ghosh, E. Tsigaridas, M. Descoteaux, P. Comon, B. Mourrain, and R. Deriche.

NumAn workshop , 2008

A polynomial based approach to extract the maxima of an antipodally symmetric spherical function and its application to extract directions from the Orientation Distribution Function in Diffusion MRI

A. Ghosh, E. Tsigaridas, M. Descoteaux, P. Comon, B. Mourain, and R. Deriche.

Computational Diffusion MRI workshop held during the MICCAI conference , 2008

Validation and Comparison of Analytical Q-Ball Imaging Methods

M. Descoteaux, P. Savadjiev, J. Campbell, B. Pike, K. Siddiqi, and R. Deriche.

4th IEEE International Symposium on Biomedical Imaging: From Nano to Macro (ISBI'07) , 2007

Splitting Tracking Through Crossing Fibers: Multidirectional Q-Ball Tracking

R. Deriche and M. Descoteaux.

4th IEEE International Symposium on Biomedical Imaging: From Nano to Macro (ISBI'07) , 2007

Segmentation of Q-Ball Images Using Statistical Surface Evolution

M. Descoteaux and R. Deriche.

Medical Image Computing and Computer-Assisted Intervention (MICCAI) , 2007

Diffusion Tensor Sharpening Improves White Matter Tractography

M. Descoteaux, R. Deriche, and C. Lenglet.

SPIE Medical Imaging , 2007

Diffusion Maps Segmentation of Magnetic Resonance Q-Ball Imaging

D. Wassermann, M. Descoteaux, and R. Deriche.

Mathematical Methods in Biomedical Image Analysis (MMBIA) workshop held during ICCV , 2007

A Fast and Robust ODF Estimation Algorithm in Q-Ball Imaging

M. Descoteaux, E. Angelino, S. Fitzgibbons, and R.Deriche.

Third IEEE International Symposium on Biomedical Imaging: from Nano to Macro , 2006

Apparent Diffusion Coefficients from High Angular Resolution Diffusion Imaging: Estimation and Applications

M. Descoteaux, E. Angelino, S. Fitzgibbons, and R. Deriche.

SPIE Medical Imaging , 2006

Bone enhancement filtering : application to sinus bone segmentation and simulation of pituitary surgery

M. Descoteaux, M. Audette, K. Chinzei, and K. Siddiqi.

Medical Image Computing and Computer-Assisted Intervention (MICCAI) , Springer, 2005

A Multi-Scale Geometric Flow for Segmenting Vasculature in MRI

M. Descoteaux, L. Collins, and K. Siddiqi.

Mathematical Methods in Biomedical Image Analysis (MMBIA) workshop held during ECCV , 2004

Vessel Driven Correction of Brain Shift

I. Reinertsen, M. Descoteaux, S. Drouin, K. Siddiqi, and L. Collins.

Medical Image Computing and Computer-Assisted Intervention (MICCAI) , 2004

Geometric Flows for Segmenting Vasculature in MRI: Theory and Validation

M. Descoteaux, L. Collins, and K. Siddiqi.

Medical Image Computing and Computer-Assisted Intervention (MICCAI) , 2004

The Creation of a Brain Atlas for Image Guided Neurosurgery using Serial Histological Data

M. Chakravarty, G. Bertrand, M. Descoteaux, A. Sadikot, and L. Collins.

Medical Image Computing and Computer-Assisted Intervention (MICCAI) , 2003

Conference abstracts

Advances in structural and functional connectivity visualization using the Fibernavigator Functional connectivity on-the-fly Connectomics visualization

M. Chamberland, M. Descoteaux, and D. K. Jones.

International Society for Magnetic Resonance in Medicine , 2018

Bundle-specific tractography using voxel-wise orientation priors

F. Rheault, E. St-onge, Q. Chenot, L. Petit, and M. Descoteaux.

International Society for Magnetic Resonance in Medicine , 2018

Multi-shell multi-tissue fODF tractography improves V1-V2 macaque connectivity mapping

G. Theaud, M. Descoteaux, J.-c. Houde, and B. Lyon.

International Society for Magnetic Resonance in Medicine , 2018

Assessing feasibility and reproducibility of a bundle-specific framework on in vivo axon diameter estimates at 300mT / m In vivo data . DW-MRI were acquired for 4 healthy subjects , each repeated 5 times over two weeks using the same protocol as the simul

M. Barakovic, G. Girard, D. Romascano, J. Rafael-patino, M. Descoteaux, D. K. Jones, J.-p. Thiran, and A. Daducci.

International Society for Magnetic Resonance in Medicine , 2018

In-Vivo Analysis of the Superficial White Matter in the Macaque Brain Using High- resolution Di ff usion MRI : preliminary results

Y. Bihan-poudec, S. Tounekti, N. Richard, M. Froesel, F. Lamberton, T. Troalen, S. B. Hamed, M. Descoteaux, and B. Hiba.

International Society for Magnetic Resonance in Medicine , 2018

Building a probabilistic atlas of the human corticospinal tract from 410 healthy participants by using enhanced bundle-specific tractography .

C. Quentin, N. Tzourio-mazoyer, F. Rheault, M. Descoteaux, and L. Petit.

International Society for Magnetic Resonance in Medicine , 2018

Reducing Tractogram Endpoint Biases with Surface-Enhanced Tractography

E. St-onge and M. Descoteaux.

International Society for Magnetic Resonance in Medicine , 2018

The " Magic DIAMOND " method : probing brain microstructure by combining b-tensor encoding and advanced diffusion compartment imaging

A. Reymbaut, B. Scherrer, G. Gilbert, F. Szczepankiewicz, M. Nilsson, and M. Descoteaux.

International Society for Magnetic Resonance in Medicine , 2018

Reducing false positives in tractography with microstructural and anatomical priors.

A. Daducci, M. Barakovic, G. Girard, M. Descoteaux, and J.-p. Thiran.

International Society for Magnetic Resonance in Medicine , 2018

White matter free water content at different stages of Alzheimer's disease

M. Dumont, K. R. A. V. Dijk, F. C. Morency, J.-c. Houde, P.-m. Jodoin, C. Bauer, T. A. Samad, M. Descoteaux, and J. A. Goodman.

International Society for Magnetic Resonance in Medicine , 2018

BOLD Hemodynamic Response Function Varies as a Function of Both Brain State and Brain Region Typically a hemodynamic response function ( HRF ), which assumes a linear relationship between neural activity and BOLD [ 1 ], is used to relate neural activity t

R. Butler, G. Gilbert, M. Descoteaux, P.-m. Bernier, and K. Whittingstall.

International Society for Magnetic Resonance in Medicine , 2018

Impact of white matter hyperintensities on tractography

G. Theaud, B. Dilharreguy, G. Catheline, and M. Descoteaux.

International Society for Magnetic Resonance in Medicine , 2017

Is the length of the white matter fiber bundles underlying the thalamo-cortical loop associated with sleep spindles? – A preliminary study

P.-O. Gaudreault, J. Carrier, M. Descoteaux, and S. Deslauriers-Gauthier.

25th annual meeting of the International Society for Magnetic Resonance in Medicine (ISMRM) Honolulu, Hi, USA. , 2017

Test­-retest reliability of tract­-specific diffusion measures

M. Boukadi, K. Marcotte, C. Bedetti, M. Chapleau, S. Deslauriers-Gauthier, J.-C. Houde, A. Boré, M. Descoteaux, and S. Brambati.

Organization for Human Brain Mapping (OHBM) , 2017

Information Flow in the White Matter During a Motor Task: A Structural Connectivity Driven Approach

G. Gallardo, D. Wassermann, R. Deriche, M. Descoteaux, and S. Deslauriers-Gauthier.

Organization for Human Brain Mapping (OHBM) , 2017

When does a volume of a bundle achieve saturation? A microstructure informed tractography study

M. Barakovic, D. Romascano, G. Girard, M. Descoteaux, J.-P. Thiran, and A. Daducci.

International Society for Magnetic Resonance in Medecine (ISMRM) , 2017

In-vivo Bundle-Specic Axon Diameter Distributions Estimation across the Corpus Callosum

M. Barakovic, D. Romascano, G. Girard, M. Descoteaux, J.-P. Thiran, and A. Daducci.

International Society for Magnetic Resonance in Medecine (ISMRM) , 2017

Fiber connection density based on in sickle cell disease

J. Coloigner, .. etal, M. Descoteaux, J.-C. Houde, .. etal, and J. Woo.

International Society of Magnetic Resonance in Medecine (ISMRM) , 2017

Effect of Different Seeding Strategies on Tractometry Reproducibility

M. Cousineau, M. Descoteaux, and H. Takemur.

International Society for Magnetic Resonance in Medecine (ISMRM) , 2017

Motor strip connectivity in congenital mirror movement disorder and callosal agenesis\r\n

J. Sidhu, J.-C. Houde, M. Cousineau, H. Theoret, K. Whittingstall, and M. Descoteaux.

Breaking the Barriers of Diffusion MRI (ISMRM workshop) , 2016

MI-Brain, a software to handle tractograms and perform interactive virtual dissection

F. Rheault, J.-C. Houde, N. Goyette, F. Morency, and M. Descoteaux.

Breaking the Barriers of Diffusion MRI (ISMRM workshop) , 2016

New insights in the structural organization of the anterior human corpus callosum

L. Petit, A. Benedictis, F. Corsini, F. Chioffi, M. Barbareschi, M. Descoteaux, and S. Sarubbo.

Breaking the Barriers of Diffusion MRI (ISMRM workshop) , 2016

Tractography based on machine learning

K. Maier-Hein, P. Neher, M.-A. Côté, M. Gotz, T. Norajitra, and M. Descoteaux.

Breaking the Barriers of Diffusion MRI (ISMRM workshop) , 2016

Fiberweb : a new web solution for medical visualization and interactions

L.-P. Ledoux, J.-C. Houde, K. Whittingstall, F. Morency, J.-R. Bélanger, and M. Descoteaux.

Breaking the Barriers of Diffusion MRI (ISMRM workshop) , 2016

SATA: Achieving volume saturation of streamline bundles in tractography

A. Gauvin, L. Petit, and M. Descoteaux.

Breaking the Barriers of Diffusion MRI (ISMRM workshop) , 2016

Exploring geometrical sheet-like structures in real-time

M. Chamberland, C. Tax, D. Fortin, K. Whittingstall, and M. Descoteaux.

Breaking the Barriers of Diffusion MRI (ISMRM workshop) , 2016

Reducing Invalid Connections with Microstructure-Driven Tractography

G. Girard, A. Daducci, L. Petit, J.-P. Thiran, K. Whittingstall, R. Deriche, D. Wassermann, and M. Descoteaux.

Breaking the Barriers of Diffusion MRI (ISMRM workshop) , 2016

Combining Tractography and Microstructure to Assess Bundle-Specific Axon Diameter Distributions

M. Barakovic, D. Romanasco, T. Dyrby, D. Alexander, M. Descoteaux, J.-P. Thiran, and A. Daducci.

Breaking the Barriers of Diffusion MRI (ISMRM workshop) , 2016

Predominance of association fibre connectivity in lateral regions of the pre- and post-central gyrus

J. Sidhu, J.-C. Houde, M. Cousineau, H. Theoret, K. Whittiingstall, and M. Descoteaux.

Human Brain Mapping (HBM) , 2016

Streamlines non-linear registration using MR-Ultrasound for intra-operative brain shift correction

F. Rheault, L. Collins, and M. Descoteaux.

Human Brain Mapping (HBM) , 2016

Microstructure­ driven tractography in the human brain

G. Girard, A. Daducci, K. Whittingstall, R. Deriche, D. Wassermann, and M. Descoteaux.

Human Brain Mapping (HBM) , 2016

Assessment of bundle-specific axon diameter distributions using diffusion MRI tractography

M. Barakovic, D. Romanasco, T. Dyrby, D. Alexander, M. Descoteaux, J.-P. Thiran, and A. Daducci.

Human Brain Mapping (HBM) , 2016

Arterial segmentation and visual stimulus-induced changes in diameter observed in the human brain

A. Bizeau, G. Gilbert, M. T. Huynh, M. Bernier, C. Bocti, and M. Descoteaux.

International Society of Magnetic Resonance in Medicine (ISMRM) , 2016

"Noise" in diffusion tractography connectomes is not additive

M. Paquette, G. Girard, M. Chamberland, and M. Descoteaux.

International Society of Magnetic Resonance in Medicine (ISMRM) , 2016

False positive bundles in tractography

M. Descoteaux, J. Sidhu, E. Garyfallidis, J.-C. Houde, P. Neher, B. Stieltjes, and K. Maier-Hei.

International Society of Magnetic Resonance in Medicine (ISMRM) , 2016

Association between structural and functional inter-subject variability of the motor and visual networks.

M. Chamberland, G. Girard, M. Bernier, M. Paquette, D. Fortin, M. Descoteaux, and K. Whittingstall.

International Society of Magnetic Resonance in Medicine (ISMRM) , 2016

Magnetic ROIs enable improved tractography accuracy through oriented prior

M. Chamberland, B. Scherrer, S. Prabhu, J. Madsen, K. Whittingstall, D. Fortin, M. Descoteaux, and S. Warfiel.

International Society of Magnetic Resonance in Medicine (ISMRM) , 2016

Tract-profiling and bundle statistics: a test-retest validation study

M. Cousineau, E. Garyfallidis, M.-A. Côté, P.-M. Jodoin, and M. Descoteaux.

International Society of Magnetic Resonance in Medicine (ISMRM) , 2016

Neuroplasticity changes in rat brain following targeted irradiation assessed by diffusion MRI tractography validated by histology and behavioral tests

J. Constanzo, M. Dumont, L. Tremblay, P. Sarret, J.-M. Longpré, K. Kirby, S. Geha, L. Masson-Côté, B. Paquette, and M. Descoteaux.

International Society of Magnetic Resonance in Medicine (ISMRM) , 2016

Color this! An automatic algorithm to assign visually distinct colors to white matter bundles

J.-C. Houde and M. Descoteaux.

International Society of Magnetic Resonance in Medicine (ISMRM) , 2016

QuickBundlesX: Sequential clustering of millions of streamlines in multiple levels of detail at record execution time

E. Garyfallidis, M.-A. Côté, F. Rheault, and M. Descoteaux.

International Society of Magnetic Resonance in Medicine (ISMRM) , 2016

Fibre directionality and information flow through the white matter: Preliminary results on the fusion of diffusion MRI and EEG

S. Deslauriers-Gauthier, J.-M. Lina, R. Butler, K. Whittingstall, P.-M. Bernier, and M. Descoteaux.

International Society of Magnetic Resonance in Medicine (ISMRM) , 2016

Denoised diffusion spectrum imaging of white matter tracts in the brainstem

C. Granziera, S. St-Jean, A. Daducci, G. Krueger, and M. Descoteaux.

International Society of Magnetic Resonance in Medicine (ISMRM) , 2016

Estimation of bundle-specific axon diameter distributions with Microstructure Informed Tractography\r\n

M. Barakovic, D. Romanasco, T. Dyrby, D. Alexander, M. Descoteaux, J.-P. Thiran, and A. Daducci.

International Society of Magnetic Resonance in Medicine (ISMRM) , 2016

Connectome-like quality diffusion MRI in 13 minutes - Improving diffusion MRI spatial resolution with denoising

S. St-Jean, G. Gilbert, and M. Descoteaux.

International Society for Magnetic Resonance in Medicine (ISMRM) , 2015

Behavioural and neural correlates of age-related speech perception deficits

P. Tremblay, N. Meunier, M.-H. Tessier, A. Tremblay, M. Descoteaux, and A. Dick.

Human Brain Mapping (HBM) , 2015

Structural connectivity reproducibility through multiple acquisitions

G. Girard, K. Whittingstall, R. Deriche, and M. Descoteaux.

Human Brain Mapping (HBM) , 2015

Tractography-driven resting-state fMRI for investigating inter-subject variability

M. Chamberland, M. Bernier, M. Descoteaux, D. Fortin, and K. Whittingstall.

Human Brain Mapping (HBM) , 2015

Human brain tissue microstructure characterization using 3D-SHORE on the HCP data

M. Zucchelli, M. Descoteaux, and G. Menegaz.

International Society of Magnetic Resonance in Medicine (ISMRM) , 2015

LOCALIZING AND CHARACTERIZING SINGLE FIBER POPULATIONS THROUGHOUT THE BRAIN

C. Tax, D. Novikov, E. Garyfallidis, M. Viergever, M. Descoteaux, and A. Leemans.

International Society of Magnetic Resonance in Medicine (ISMRM) , 2015

Surface tracking from the cortical mesh complements diffusion MRI fiber tracking near the cortex

E. St-Onge, G. Girard, K. Whittingstall, and M. Descoteaux.

International Society of Magnetic Resonance in Medicine (ISMRM) , 2015

Real time interaction with millions of streamlines

F. Rheault, J.-C. Houde, and M. Descoteaux.

International Society of Magnetic Resonance in Medicine (ISMRM) , 2015

An algorithm and quantitative evaluation framework for registration of multi-modal brain MRI

O. Ocegueda, E. Garyfallidis, M. Descoteaux, and M. River.

International Society of Magnetic Resonance in Medicine (ISMRM) , 2015

How to avoid biased streamlines-based metrics for streamlines with variable step sizes

J.-C. Houde, M.-A. Côté, and M. Descoteaux.

International Society of Magnetic Resonance in Medicine (ISMRM) , 2015

Studying white matter tractography reproducibility through connectivity matrices

G. Girard, K. Whittingstall, R. Deriche, and M. Descoteaux.

International Society of Magnetic Resonance in Medicine (ISMRM) , 2015

Recognition of bundles in healthy and severely diseased brains

E. Garyfallidis, M.-A. Côté, J. Hau, G. Perchey, L. Petit, S. Cunnane, and M. Descoteaux.

International Society of Magnetic Resonance in Medicine (ISMRM) , 2015

How to get more out of a clinically feasible 64 Gradient dMRI Acquisition: Multi-Shell versus Single-Shell

R. Fick, M. Zucchelli, G. Girard, G. Menegaz, M. Descoteaux, and R. Deriche.

International Society of Magnetic Resonance in Medicine (ISMRM) , 2015

The impact of a new sampling theorem for non-bandlimited functions on the sphere: HARDI at the price of DTI?

S. Deslauriers-Gauthier, P. Marziliano, M. Paquette, and M. Descoteaux.

International Society of Magnetic Resonance in Medicine (ISMRM) , 2015

Cleaning up the mess: tractography outlier removal using hierarchical QuickBundles clustering

M.-A. Cote, E. Garyfallidis, H. Larochelle, and M. Descoteaux.

International Society of Magnetic Resonance in Medicine (ISMRM) , 2015

Interactively computing and visualizing functional and structural brain connectivity in real-time

M. Chamberland, M. Bernier, D. Fortin, K. Whittingstall, and M. Descoteaux.

International Society of Magnetic Resonance in Medicine (ISMRM) , 2015

An EEG/MRI-dMRI Study: Structural properties of the thalamus and its influence on human alpha waves

E. Renauld, M. Descoteaux, and K. Whittinstall.

Organization of Human Brain Mapping (OHBM) , 2014

Uncovering a visuospatial network at rest

M. Chamberland, M. Descoteaux, M. Bernier, D. Fortin, and K. Whittinstall.

Organization of Human Brain Mapping (OHBM) , 2014

Connectivity directionally-encoded color map: a streamline-based color mapping

G. Girard, K. Whittingstall, R. Deriche, and M. Descoteaux.

Organization of Human Brain Mapping (OHBM) , 2014

The new methods available in Dipy 0.7.0+ that you should know about

E. Garyfallidis, A. Rokem, B. Amirbekian, S. van der Walt, M. Zucchelli, J.-O. Ocegueda-Gonzalez, S. St-Jean, G. Girard, M. Paquette, I. Nimmo-Smith, M. Brett, and M. Descoteaux.

Organization of Human Brain Mapping (OHBM) , 2014

The cortico-cortical structural connectivity of the human insula

J. Ghaziri, A. Tucholka, J.-C. Houde, G. Girard, M. Descoteaux, P. Rainville, and D. Nguye.

Organization of Human Brain Mapping (OHBM) , 2014

Comparison between discrete and continuous propagator indices from Cartesian q-space DSI sampling

M. Zuchelli, E. Garyfallidis, M. Paquette, S. Merlet, G. Menegaz, and M. Descoteaux.

International Society of Magnetic Resonance in Medicine (ISMRM) , 2014

Non Local Spatial and Angular Matching : a new denoising technique for diffusion MRI

S. St-Jean, P. Coupé, and M. Descoteaux.

International Society of Magnetic Resonance in Medicine (ISMRM) , 2014

DSI 101: Better ODFs for free!

M. Paquette, S. Merlet, R. Deriche, and M. Descoteaux.

International Society of Magnetic Resonance in Medicine (ISMRM) , 2014

How should tractography go forward? A Tractometer evaluation of local reconstruction and tracking

J.-C. Houde, E. Caruyer, A. Daducci, and M. Descoteaux.

International Society of Magnetic Resonance in Medicine (ISMRM) , 2014

Choosing Tractography Parameters to Improve Connectivity Mapping

G. Girard, K. Whittingstall, R. Deriche, and M. Descoteaux.

International Society of Magnetic Resonance in Medicine (ISMRM) , 2014

How to perform best ODF reconstruction from the Human Connectome Project sampling scheme?

E. Garyfallidis, M. Zuchelli, J.-C. Houde, and M. Descoteaux.

International Society of Magnetic Resonance in Medicine (ISMRM) , 2014

Direct native-space fiber bundle alignment for group comparisons

E. Garyfallidis, D. Wassermann, and M. Descoteaux.

International Society of Magnetic Resonance in Medicine (ISMRM) , 2014

Phantomas: a flexible software library to simulate diffusion MR phantoms

E. Caruyer, A. Daducci, M. Descoteaux, J.-C. Houde, J.-P. Thiran, and R. Verm.

International Society of Magnetic Resonance in Medicine (ISMRM) , 2014

A case of young-onset dementia with confluent white matter changes: adult-onset autosomal dominant leukodystrophy due to chromosome 5Q23\r\n

R. Laforce, M. Roy, J.-P. Bouchard, M. Descoteaux, C. Berthelot, M. Brisson, and R. Bouchar.

8th International Congress on Vascular Dementia - ICVD , 2013

White matter hyperintensities in the cholinergic tracts and cognition: a HARDI tractography study

G. N. Charron, C. Presseau, M. Descoteaux, D. Lorrain, T. Fulop, and C. Bocti.

6th Congress of the International Society of Vascular Behavioural and Cognitive Disorders , 2013

Explore the brain white matter networks in real-time: Multi-sticks fiber tracking

M. Chamberland and M. Descoteaux.

International Society of Magnetic Resonance in Medicine (ISMRM) , 2013

A Separable Approximation to DSI Deconvolution

M. Paquette and M. Descoteaux.

International Society of Magnetic Resonance in Medicine (ISMRM) , 2013

Online Filtering Tractography: Tracking with anatomical priors

G. Girard and M. Descoteaux.

International Society of Magnetic Resonance in Medicine (ISMRM) , 2013

Compressive Sensing DSI

S. Merlet, M. Paquette, R. Deriche, and M. Descoteaux.

ISBI HARDI Reconstruction Challenge , 2013

Particle Swarm Optimization in Multi-Tensor Imaging

M. Paquette, E. Garyfallidis, S. St-Jean, P. Coupé, and M. Descoteaux.

ISBI HARDI Reconstruction Challenge , 2013

Deconvolution enhanced Generalized Q-Sampling 2 and DSI deconvolution

E. Garyfallidis, S. St-Jean, M. Paquette, P. Coupé, and M. Descoteaux.

ISBI HARDI Reconstruction Challenge , 2013

Improving the evaluation of cardiac function in rats at 7T by using non-local means filtering

B. Tricot, M. Descoteaux, M. Lepage, O. Lesur, L. Tremblay, F. Chagnon, and A. Lalande.

ESMRMB , 2012

Link between function and structure in the resting-state brain : an fMRI and VBM study

N. Vigneau-Roy, M. Bernier, M. Descoteaux, and K. Whittingstall.

Human Brain Mapping (HBM) , 2012

Real-time fiber tractography : Interactive parameter tuning for neurosurgical interventions

M. Chamberland, D. Fortin, and M. Descoteaux.

Human Brain Mapping (HBM) , 2012

Testing classical single-shell HARDI techniques

M. Descoteaux and A. Boré.

ISBI 2012 HARDI reconstruction workshop , 2012

Sparse l1-l1 Multi-Tensor Imaging at the price of DTI

M. Paquette and M. Descoteaux.

ISBI 2012 HARDI reconstruction workshop , 2012

The Parallel Kalman Filter: an efficient tool to deal with real-time non central Chi noise correction

V. Brion, O. Riff, M. Descoteaux, J.-F. Mangin, D. L. Bihan, C. Poupon, and F. Poupo.

International Society of Magnetic Resonance in Medicine (ISMRM) , 2012

Diffusion and multiple orientations from 1.5 MR systems with limited gradient tables

S. Merlet, R. Deriche, K. Whittingstall, and M. Descoteaux.

International Society of Magnetic Resonance in Medicine (ISMRM) , 2012

Ensemble Average Propagator Reconstruction via Compressed Sensing: Discrete or Continuous Bases?

S. Merlet, M. Paquette, R. Deriche, and M. Descoteaux.

International Society of Magnetic Resonance in Medicine (ISMRM) , 2012

Combining parallel multiresolution and PCA initialization for a fully automatic PET-MRI registration

M. Bernier, M. Lepage, R. Lecomte, L. Tremblay, L. Doré-Savard, and M. Descoteaux.

International Symposium on Magnetic Resonance in Medicine (ISMRM) , 2011

Real-time Rician noise correction applied to real-time HARDI and HYDI

V. Brion, O. Riff, I. Kezele, M. Descoteaux, D. L. Bihan, J.-F. Mangin, C. Poupon, and F. Poupo.

International Society of Magnetic Resonance in Medicine (ISMRM) , 2011

Sparsity Characterisation of the Diffusion Propagator

E. Saint-Amant and M. Descoteaux.

International Society of Magnetic Resonance in Medicine (ISMRM) , 2011

White matter connectivity of the human insula

A. Tucholka, M. Descoteaux, D. Nguyen, and S. Lippé.

Human Brain Mapping (HBM) , 2011

A Fiber Navigator for Neurosurgical Planning

O. Vaillancourt, A. Boré, G. Girard, and M. Descoteaux.

Human Brain Mapping (HBM) , 2011

DTI/fMRI fusion at 1.5T confirms robust relationship between structural and functional connectivity in a glioma patient

M. Descoteaux, D. Fortin, and K. Whittingstall.

ISMRM Workshop On Mapping Functional Networks For Brain Surgery , 2011

A diffusion hardware phantom looking like a coronal brain slice

C. Poupon, L. Laribière, G. Tournier, J. Bernard, D. Fournier, P. Fillard, M. Descoteaux, and J.-F. Mangi.

International Society of Magnetic Resonance in Medecine (ISMRM) , 2010

Impact of Outliers in DTI and QBI - Clinical Implications and Correction Strategies

M. Sharman, J. Cohen-Adad, M. Descoteaux, A. Messé, H. Benali, and S. Lehéricy.

International Society of Magnetic Resonance in Medecine (ISMRM) , 2010

Classification of non- Gaussian diffusion profiles for HARDI data simplification

V. Prckovska, A. Vilanova, C. Poupon, B. H. Romeny, and M. Descoteaux.

International Society of Magnetic Resonance in Medecine (ISMRM) , 2010

Analytical Q-Ball Imaging with Optimal λ-Regularization

M. Descoteaux, G. Koay, P. Basser, and R. Deriche.

International Society of Magnetic Resonance in Medecine (ISMRM) , 2010

Importance of multiscale analysis in HARDI studies

I. Kezele, C. Poupon, M. Descoteaux, F. Poupon, and J.-F. Mangi.

International Society of Magnetic Resonance in Medicine (ISMRM) , 2009

Rician denoising dedicated to single- shell diffusion-weighted MR data using spherical harmonics : impact on fibre orientation distribution maps

V. Brion, I. Kezele, M. Descoteaux, J.-F. Mangin, and C. Poupo.

European Society of Magnetic Resonance in Medicine and Biology (ESMRMB) , 2009

Evaluation of q-ball metrics for assessing the integrity of the injured spinal cord

J. Cohen-Adad, H. Leblond, A. Ghosh, M. Descoteaux, R. Deriche, H. Benali, and S. Rossignol.

International Society of Magnetic Resonance in Medecine (ISMRM) , 2009

A Polynomial Based Approach to Extract Fiber Directions from the ODF, and its Experimental Validation

A. Ghosh, E. Tsigaridas, M. Descoteaux, and R. Deriche.

International Society of Magnetic Resonance in Medecine (ISMRM) , 2009

Multiresolution decomposition of HARDI and ODF profiles using spherical wavelets

I. Kezele, M. Descoteaux, C. Poupon, P. Abrial, F. Poupon, and J.-F. Mangi.

International Society of Magnetic Resonance in Medecine (ISMRM) , 2009

Millimeter analytical Q-ball fiber density function for a better separation of fiber populations at 7T

C. Poupon, C. Wiggins, M. Descoteaux, J.-F. Mangin, and D. L. Bih.

International Society of Magnetic Resonance in Medecine (ISMRM) , 2009

Optimal real-time q-ball imaging with incremental recursive orientation sets

M. Descoteaux, J. Calder, C. Poupon, F. Poupon, and R. Deriche.

International Society of Magnetic Resonance in Medecine (ISMRM) , 2009

NEX or no NEX? A high angular resolution diffusion imaging study

M. Descoteaux, N. Wiest-Daesslé, S. Prima, C. Barillot, R. Deriche, J.-F. Mangin, and C. Poupo.

International Society of Magnetic Resonance in Medecine (ISMRM) , 2009

Diffusion Propagator Imaging (DPI) : an alternative to Diffusion Spectrum Imaging (DSI)

M. Descoteaux, K.-H. Cho, Y.-P. Chao, J.-F. Mangin, C.-P. Lin, and C. Poupo.

International Society of Magnetic Resonance in Medecine (ISMRM) , 2009

Comparison of quantitative connectivity measures derived from diffusion weighted images

T. Yo, A. Anwander, M. Descoteaux, P. Fillard, C. Poupon, and T. Knoesche.

Human Brain Mapping (HBM) , 2009

Comparison of DTI and Q-Ball imaging metrics in a cat model of spinal cord injury

J. Cohen-Adad, A. Ghosh, H. Leblond, M. Descoteaux, R. Deriche, H. Benali, and S. Rossignol.

Human Brain Mapping (HBM) , 2009

Millimeter analytical Q-ball imaging at 7T

C. J. Wiggins, D. L. Bihan, T. Feiweier, M. Descoteaux, J.-F. Mangin, and C. Poupon.

Highfield workshop, International Society for Magnetic Resonance in Medicine (ISMRM) , 2008

Q-Ball Imaging of the Spinal Cord

J. Cohen-Adad, M. Descoteaux, R. Deriche, S. Rossignol, R. D. Hoge, and H. Benali.

ISMRM , 2008

Characterization of the healthy and injured spinal cord using q-ball imaging

J. Cohen-Adad, M. Descoteaux, G. Barrière, R. Hoge, R. Deriche, H. Benali, and S. Rossignol.

Pathogenesis and Mechanisms of White Matter Injury workshop , 2008

Diffusion Tensor Imaging of White Matter Abnormalities in Patients with Writer’s Cramp

C. Delmaire, M. Vidailhet, M. Descoteaux, D. Wassermann, F. Bourdain, C. Lenglet, S. Sangla, A. Terrier, R. Deriche, and S. Lehéricy.

International Society of Magnetic Resonance in Medecine (ISMRM) , 2008

Q-Ball Imaging of the Spinal Cord

J. Cohen-Adad, M. Descoteaux, R. Deriche, S. Rossignol, R. Hoge, and H. Benali.

International Society of Magnetic Resonance in Medecine (ISMRM) , 2008

4th Order Diffusion Tensor Estimation and Application

A. Ghosh, M. Descoteaux, and R. Deriche.

International Society of Magnetic Resonance in Medecine (ISMRM) , 2008

Disambiguation of Complex Subvoxel Fibre Configurations in High Angular Resolution Fibre Tractography

P. Savadjiev, J. S. W. Campbell, M. Descoteaux, R. Deriche, G. B. Pike, and K. Siddiqi.

Joint Annual Meeting ISMRM-ESMRMB , 2007

Analytic ODF Estima- tion and Validation in Q-Ball Imaging

M. Descoteaux, R. Deriche, P. Savadjiev, J. Campbell, G. Pike, and K. Siddiqi.

Human Brain Mapping (HBM) , 2007

Sharpening improves clinically feasible q-ball imaging

M. Descoteaux and R. Deriche.

International Society of Magnetic Resonance in Medecine (ISMRM) , 2007

Probabilistic Q-Ball Tractography Solves Crossings of Callosal Fibers

A. Anwander, M. Descoteaux, and R. Deriche.

Human Brain Mapping , The Organization for Human Brain Mapping, 2007

Research reports

Theses

MODÉLISATION LOCALE EN IMAGERIE PAR RÉSONANCE MAGNÉTIQUE DE DIFFUSION : DE L‘ACQUISITION COMPRIMÉE AU CONNECTOME

M. Paquette.

Sherbrooke, 2017

ANALYSE DE POPULATIONS NEURODÉGÉNÉRATIVES ET ASSURANCE QUALITÉ DE LA TRACTOGRAPHIE DE LA MATIÈRE BLANCHE\r\nDU CERVEAU

M. Cousineau.

Sherbrooke, 2017

RÉSEAUX DE NEURONES GÉNÉRATIFS AVEC STRUCTURE

M.-A. Côté.

Sherbrooke, 2017

Développement d’outils neuroinformatiques spécialisés pour améliorer l’analyse individuelle en médecine personnalisée

M. Chamberland.

Sherbrooke, 2017

FIBERWEB : VISUALISATION ET INTERACTION DANS LE WEB EN IMAGERIE PAR RÉSONANCE\r\nMAGNÉTIQUE DE DIFFUSION

L.-P. Ledoux.

Sherbrooke, 2016

Assurance qualité en dissection virtuelle des faisceaux de la matière blanche par tractographie\r\n

A. Gauvi.

Université de Sherbrooke, 2016

Tractographie de la matière blanche orientée par a priori anatomiques et microstructurels

G. Girard.

Université de Sherbrooke (Canada), Université Nice Sophia Antipolis (France), 2016

Analyse et modélisation de la surface corticale et de l'architecture sous-jacente des axones

E. St-Onge.

Sherbrooke, 2016

Acquisitions d’irm de diffusion à haute résolution spatiale: nouvelles perspectives grâce au débruitage spatialement adaptatif et angulaire

S. St-Jean.

2015

Application de la compression à la tractographie en imagerie par résonance magnétique de diffusion

C. Presseau.

Université de Sherbrooke, 2014

Visualisation en imagerie par résonance magnétique de diffusion : Tractographie en temps réel des fibres de la matière blanche du cerveau

M. Chamberland.

Université de Sherbrooke, 2013

Tractographie en imagerie par résonance magnétique de diffusion: approches avec a priori anatomiques

G. Girard.

Université de Sherbrooke, 2013

Mise en place de techniques d'imagerie cardiaque par résonance magnétique chez le petit animal

B. Tricot.

Université de Sherbrooke, 2012

Segmentation des fibres de la matière blanche

M.-A. Côté.

Université de Sherbrooke, 2012

Recalage multi-modal automatique: technique de multi-résolution parallèle appliquée à la TEP et l'IRM

M. Bernier.

Université de Sherbrooke, 2012

Couplage de l'acquisition compressée et de l'imagerie du spectre de diffusion

E. Saint-Amant.

Université de Sherbrooke, 2011

Impacts des étapes de pré-traitement des données de diffusion sur la tractographie - Imagerie de diffusion

A. Boré.

Université de Sherbrooke, 2011

High Angular Resolution Diffusion MRI: from Local Estimation to Segmentation and Tractography

M. Descoteaux.

2008

A Multi-Scale Geometric Flow for Segmenting Vasculature in MRI: Theory and Validation

M. Descoteaux.

2004