Most recent publications

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2017

[Journal] Bizeau, A., G. Gilbert, M. Bernier, M. Huynh, C. Bocti, M. Descoteaux, and K. Whittingstall. "Stimulus-evoked changes in cerebral vessel diameter: A study in healthy humans." Journal of Cerebral Blood Flow & Metabolism, 2017.

[Journal] Butler, R., G. Gilbert, M. Descoteaux, P-M. Bernier, and K. Whittingstall. "Application of polymer sensitive MRI sequence to localization of EEG electrodes." Journal of Neuroscience Methods, 278, 36-45, 2017. DOI URL

2016

[Journal] Chamberland, M., B. Scherrer, S. Prabhu, J. Madsen, D. Fortin, K. Whittingstall, M. Descoteaux, and S. Warfield. "Active Delineation of Meyer’s Loop Using Oriented Priors Through MAGNEtic Tractography (MAGNET)." Human Brain Mapping (HBM), 2016. URL

[Journal] Daducci, A., A. Dal Palu, M. Descoteaux, and J-P. Thiran. "Microstructure informed tractography: pitfalls and open challenges." Frontiers in Neuroscience, section Brain Imaging Methods, 10 (00247), 2016. DOI URL

[Journal] De Benedictis, A., L. Petit, M. Descoteaux, C. Marras, M. Barbareschi, F. Corsini, M. Dallabona, F. Chioffi, and S. Sarubbo. "New insights in the homotopic and heterotopic connectivity of the frontal portion of the human corpus callosum revealed by microdissection and diffusion tractography." Human Brain Mapping (HBM), 2016. URL

[Journal] Deslauriers-Gauthier, S., P. Marziliano, M. Paquette, and M. Descoteaux. "The application of a new sampling theorem for non-bandlimited signals on the sphere: Improving the recovery of crossing fibers for low b-value acquisitions." Medical Image Analysis, 30, 46-59, 2016. DOI URL

[Journal] Hau, J., S. Sarubbo, J-C. Houde, F. Corsini, G. Girard, C. Deledalle, F. Crivello, L. Zago, E. Mellet, G. Jobard, M. Joliot, B. Mazoyer, N. Tzourio-Mazoyer, M. Descoteaux, and L. Petit. "Revisiting the human uncinate fasciculus, its subcomponents and asymmetries with stem-based tractography and microdissection validation." Brain Structure and Function, 2016. URL

[Journal] Maier-Hein, K., P. Neher, J-C. Houde, M-A. Côté, E. Garyfallidis, . ..., L. Petit, E. Caruyer, A. Daducci, T. Dyrby, T. Holland‐Letz, C. Hilgetag, B. Stieltjes, and M. Descoteaux. "Tractography-based connectomes are dominated by false-positive connections." BioRxiv, 2016. DOI URL

[Journal] Ocegueda, O., O. Dalmau, E. Garyfallidis, M. Descoteaux, and M. Rivera. "On the computation of integrals over fixed-size rectangles of arbitrary dimension." Pattern Recognition Letters, 79 (1): August, 68-72, 2016. DOI URL

[Journal] Paquette, M., G. Gilbert, and M. Descoteaux. "Optimal DSI reconstruction parameter recommendations: Better ODFs and better connectivity." NeuroImage, 2016. URL

[Journal] Renauld, E., M. Descoteaux, M. Bernier, E. Garyfallidis, and K. Whittingstall. "Semi-automatic segmentation of optic radiations and LGN, and their relationship to EEG alpha waves." PlosOne, 2016. URL

[Journal] Rozanski, V., N. Moreira da Silva, S-A. Ahmadi, J. Mehrkens, J. da Silva Cunha, J-C. Houde, and M. Descoteaux. "The role of the pallidothalamic fibre tracts in deep brain stimulation for dystonia: A diffusion MRI tractography study." Human Brain Mapping, 2016. DOI URL

[Journal] St-Jean, S., P. Coupé, and M. Descoteaux. "Non Local Spatial and Angular Matching : Enabling higher spatial resolution diffusion MRI datasets through adaptive denoising." Medical Image Analysis, 2016. DOI URL

[Abstract] Barakovic, M., D. Romanasco, T. Dyrby, D. Alexander, M. Descoteaux, J-P. Thiran, and A. Daducci. "Estimation of bundle-specific axon diameter distributions with Microstructure Informed Tractography ." Proceeding of: International Society of Magnetic Resonance in Medicine (ISMRM). May. Singapore, 2016.

[Abstract] Barakovic, M., D. Romanasco, T. Dyrby, D. Alexander, M. Descoteaux, J-P. Thiran, and A. Daducci. "Assessment of bundle-specific axon diameter distributions using diffusion MRI tractography." Proceeding of: Human Brain Mapping (HBM). June. Geneva, Switzerland, 2016.

[Abstract] Barakovic, M., D. Romanasco, T. Dyrby, D. Alexander, M. Descoteaux, J-P. Thiran, and A. Daducci. "Combining Tractography and Microstructure to Assess Bundle-Specific Axon Diameter Distributions." Proceeding of: Breaking the Barriers of Diffusion MRI (ISMRM workshop). September. Lisbon, Portugal, 2016.

[Abstract] Bizeau, A., G. Gilbert, M. Tung Huynh, M. Bernier, C. Bocti, and M. Descoteaux. "Arterial segmentation and visual stimulus-induced changes in diameter observed in the human brain." Proceeding of: International Society of Magnetic Resonance in Medicine (ISMRM). May. Singapore, 2016.

[Abstract] Chamberland, M., B. Scherrer, S. Prabhu, J. Madsen, K. Whittingstall, D. Fortin, M. Descoteaux, and S. Warfield. "Magnetic ROIs enable improved tractography accuracy through oriented prior." Proceeding of: International Society of Magnetic Resonance in Medicine (ISMRM). May. Singapore, 2016.

[Abstract] Chamberland, M., G. Girard, M. Bernier, M. Paquette, D. Fortin, M. Descoteaux, and K. Whittingstall. "Association between structural and functional inter-subject variability of the motor and visual networks." Proceeding of: International Society of Magnetic Resonance in Medicine (ISMRM). May. Singapore, 2016.

[Abstract] Chamberland, M., C. Tax, D. Fortin, K. Whittingstall, and M. Descoteaux. "Exploring geometrical sheet-like structures in real-time." Proceeding of: Breaking the Barriers of Diffusion MRI (ISMRM workshop). September. Lisbon, Portugal, 2016.

[Abstract] Constanzo, J., M. Dumont, L. Tremblay, P. Sarret, J-M. Longpré, K. Kirby, S. Geha, L. Masson-Côté, B. Paquette, and M. Descoteaux. "Neuroplasticity changes in rat brain following targeted irradiation assessed by diffusion MRI tractography validated by histology and behavioral tests ." Proceeding of: International Society of Magnetic Resonance in Medicine (ISMRM). May. Singapore, 2016.

[Abstract] Cousineau, M., E. Garyfallidis, M-A. Côté, P-M. Jodoin, and M. Descoteaux. "Tract-profiling and bundle statistics: a test-retest validation study." Proceeding of: International Society of Magnetic Resonance in Medicine (ISMRM). May. Singapore, 2016.

[Abstract] Descoteaux, M., J. Sidhu, E. Garyfallidis, J-C. Houde, P. Neher, B. Stieltjes, and K. Maier-Hein. "False positive bundles in tractography." Proceeding of: International Society of Magnetic Resonance in Medicine (ISMRM). May. Singapore, 2016.

[Abstract] Deslauriers-Gauthier, S., J-M. Lina, R. Butler, K. Whittingstall, P-M. Bernier, and M. Descoteaux. "Fibre directionality and information flow through the white matter: Preliminary results on the fusion of diffusion MRI and EEG." Proceeding of: International Society of Magnetic Resonance in Medicine (ISMRM). May. Singapore, 2016.

[Abstract] Garyfallidis, E., M-A. Côté, F. Rheault, and M. Descoteaux. "QuickBundlesX: Sequential clustering of millions of streamlines in multiple levels of detail at record execution time." Proceeding of: International Society of Magnetic Resonance in Medicine (ISMRM). May. Singapore, 2016.

[Abstract] Gauvin, A., L. Petit, and M. Descoteaux. "SATA: Achieving volume saturation of streamline bundles in tractography." Proceeding of: Breaking the Barriers of Diffusion MRI (ISMRM workshop). September. Lisbon, Portugal, 2016.

[Abstract] Girard, G., A. Daducci, K. Whittingstall, R. Deriche, D. Wassermann, and M. Descoteaux. "Microstructure­ driven tractography in the human brain." Proceeding of: Human Brain Mapping (HBM). June. Geneva, Switzerland, 2016.

[Abstract] Girard, G., A. Daducci, L. Petit, J-P. Thiran, K. Whittingstall, R. Deriche, D. Wassermann, and M. Descoteaux. "Reducing Invalid Connections with Microstructure-Driven Tractography." Proceeding of: Breaking the Barriers of Diffusion MRI (ISMRM workshop). September. Lisbon, Portugal, 2016.

[Abstract] Granziera, C., S. St-Jean, A. Daducci, G. Krueger, and M. Descoteaux. "Denoised diffusion spectrum imaging of white matter tracts in the brainstem." Proceeding of: International Society of Magnetic Resonance in Medicine (ISMRM). May. Singapore, 2016.

[Abstract] Houde, J-C. and M. Descoteaux. "Color this! An automatic algorithm to assign visually distinct colors to white matter bundles." Proceeding of: International Society of Magnetic Resonance in Medicine (ISMRM). May. Singapore, 2016.

[Abstract] Ledoux, L-P., J-C. Houde, K. Whittingstall, F. Morency, J-R. Bélanger, and M. Descoteaux. "Fiberweb : a new web solution for medical visualization and interactions." Proceeding of: Breaking the Barriers of Diffusion MRI (ISMRM workshop). September. Lisbon, Portugal, 2016.

[Abstract] Maier-Hein, K., P. Neher, M-A. Côté, M. Gotz, T. Norajitra, and M. Descoteaux. "Tractography based on machine learning." Proceeding of: Breaking the Barriers of Diffusion MRI (ISMRM workshop). September. Lisbon, Portugal, 2016.

[Abstract] Paquette, M., G. Girard, M. Chamberland, and M. Descoteaux. ""Noise" in diffusion tractography connectomes is not additive." Proceeding of: International Society of Magnetic Resonance in Medicine (ISMRM). May. Singapore, 2016.

[Abstract] Petit, L., A. Benedictis, F. Corsini, F. Chioffi, M. Barbareschi, M. Descoteaux, and S. Sarubbo. "New insights in the structural organization of the anterior human corpus callosum." Proceeding of: Breaking the Barriers of Diffusion MRI (ISMRM workshop). September. Lisbon, Portugal, 2016.

[Abstract] Rheault, F., L. Collins, and M. Descoteaux. "Streamlines non-linear registration using MR-Ultrasound for intra-operative brain shift correction." Proceeding of: Human Brain Mapping (HBM). June. Geneva, Switzerland, 2016.

[Abstract] Rheault, F., J-C. Houde, N. Goyette, F. Morency, and M. Descoteaux. "MI-Brain, a software to handle tractograms and perform interactive virtual dissection." Proceeding of: Breaking the Barriers of Diffusion MRI (ISMRM workshop). September. Lisbon, Portugal, 2016.

[Abstract] Sidhu, J., J-C. Houde, M. Cousineau, H. Theoret, K. Whittiingstall, and M. Descoteaux. "Predominance of association fibre connectivity in lateral regions of the pre- and post-central gyrus." Proceeding of: Human Brain Mapping (HBM). June. Geneva, Switzerland, 2016.

[Abstract] Sidhu, J., J-C. Houde, M. Cousineau, H. Theoret, K. Whittingstall, and M. Descoteaux. "Motor strip connectivity in congenital mirror movement disorder and callosal agenesis ." Proceeding of: Breaking the Barriers of Diffusion MRI (ISMRM workshop). September. Lisbon, Portugal, 2016.

2015

[Journal] Chamberland, M., M. Bernier, D. Fortin, K. Whittingstall, and M. Descoteaux. "3D interactive tractography-informed resting-state fMRI connectivity." Frontiers in Neuroscience: Brain Imaging Methods, 2015. DOI URL

[Journal] Garyfallidis, E., O. Ocegueda, D. Wassermann, and M. Descoteaux. "Robust and efficient linear registration of white-matter fascicles in the space of streamlines." NeuroImage, 117, 124-140, 2015. URL

[Journal] Ghaziri, J., A. Tucholka, G. Girard, J-C. Houde, O. Boucher, G. Gilbert, M. Descoteaux, P. Rainville, and D. Nguyen. "The corticocortical structural connectivity of the human insula ." Cerebral Cortex, 1-15, 2015. DOI URL

[Journal] Neher, P., M. Descoteaux, J-C. Houde, B. Stieltjes, and K. Maier-Hein. "Strengths and weaknesses of state of the art fiber tractography pipelines – A comprehensive in-vivo and phantom evaluation study using Tractometer." Medical Image Analysis, 26 (1): 287-305, 2015. URL

[Journal] Ning, L., F. Launb, Y. Guru, E. DiBellad, S. Deslauriers-Gauthier, T. Thinhinane, A. Ghosh, M. Zucchelli, G. Menegaz, R. Fick, S. St-Jean, M. Paquette, R. Aranda, M. Descoteaux, R. Deriche, L. O\\\'Donnell, and Y. Rathi. "Sparse Reconstruction Challenge for diffusion MRI: Validation on a physical phantom to determine which acquisition scheme and analysis method to use?" 26 (1): 316-331, 2015. URL

[Journal] Presseau, C., P-M. Jodoin, J-C. Houde, and M. Descoteaux. "A new compression format for fiber tracking datasets." NeuroImage, 109 (April): 73-83, 2015. URL

[Journal] Tax, C., M. Chamberland, M. van Stralen, M. Viergever, K. Whittingstall, D. Fortin, M. Descoteaux, and A. Leemans. "Seeing More by Showing Less: Orientation-Dependent Transparency Rendering for Fiber Tractography Visualization." PLOS ONE, 1-20, 2015. DOI URL

Descoteaux, M.. "High Angular Resolution Diffusion Imaging (HARDI)." In Wiley Encyclopedia of Electrical and Electronics Engineering (EEEE),, 2015. DOI URL

Prckovska, V., M. Andorra, E. Martinez-Heras, P. Villoslada, R. Duits, D. Fortin, P. Rodrigues, and M. Descoteaux. "Contextual diffusion image post-processing aids clinical applications." In Visualization and Processing of Higher Order Descriptors for Multi-Valued Data,, Springer, 2015.

Vaillancourt, O., M. Chamberland, J-C. Houde, and M. Descoteaux. "Visualization of Diffusion Propagator and Multiple Parameter Diffusion Signal." In Visualization and Processing of Higher Order Descriptors for Multi-Valued Data,, Springer, 2015.

[Proceedings] Girard, G., R. Fick, M. Descoteaux, R. Deriche, and D. Wassermann. "AxTract: Microstructure-Driven Tractography Based on the Ensemble Average Propagator." Paper presented at Information Processing in Medical Imaging (IPMI). June 28th - July 1st. Isle of Skye, UK. Springer, 675-686. Lecture Notes in Computer Science, 2015. URL

[Abstract] Chamberland, M., M. Bernier, D. Fortin, K. Whittingstall, and M. Descoteaux. "Interactively computing and visualizing functional and structural brain connectivity in real-time." Proceeding of: International Society of Magnetic Resonance in Medicine (ISMRM). Toronto, Canada, 2015.

[Abstract] Chamberland, M., M. Bernier, M. Descoteaux, D. Fortin, and K. Whittingstall. "Tractography-driven resting-state fMRI for investigating inter-subject variability." Proceeding of: Human Brain Mapping (HBM). Honolulu, Hawaii, 2015.

[Abstract] Cote, M-A., E. Garyfallidis, H. Larochelle, and M. Descoteaux. "Cleaning up the mess: tractography outlier removal using hierarchical QuickBundles clustering." Proceeding of: International Society of Magnetic Resonance in Medicine (ISMRM). Toronto, Canada, 2015.

[Abstract] Deslauriers-Gauthier, S., P. Marziliano, M. Paquette, and M. Descoteaux. "The impact of a new sampling theorem for non-bandlimited functions on the sphere: HARDI at the price of DTI?" Proceeding of: International Society of Magnetic Resonance in Medicine (ISMRM). Toronto, Canada, 2015.

[Abstract] Fick, R., M. Zucchelli, G. Girard, G. Menegaz, M. Descoteaux, and R. Deriche. "How to get more out of a clinically feasible 64 Gradient dMRI Acquisition: Multi-Shell versus Single-Shell." Proceeding of: International Society of Magnetic Resonance in Medicine (ISMRM). Toronto, Canada, 2015.

[Abstract] Garyfallidis, E., M-A. Côté, J. Hau, G. Perchey, L. Petit, S. Cunnane, and M. Descoteaux. "Recognition of bundles in healthy and severely diseased brains." Proceeding of: International Society of Magnetic Resonance in Medicine (ISMRM). Toronto, Canada, 2015.

[Abstract] Girard, G., K. Whittingstall, R. Deriche, and M. Descoteaux. "Studying white matter tractography reproducibility through connectivity matrices." Proceeding of: International Society of Magnetic Resonance in Medicine (ISMRM). Toronto, Canada, 2015.

[Abstract] Girard, G., K. Whittingstall, R. Deriche, and M. Descoteaux. "Structural connectivity reproducibility through multiple acquisitions." Proceeding of: Human Brain Mapping (HBM). Honolulu, Hawaii, 2015.

[Abstract] Houde, J-C., M-A. Côté, and M. Descoteaux. "How to avoid biased streamlines-based metrics for streamlines with variable step sizes." Proceeding of: International Society of Magnetic Resonance in Medicine (ISMRM). Toronto, Canada, 2015.

[Abstract] Ocegueda, O., E. Garyfallidis, M. Descoteaux, and M. Rivera. "An algorithm and quantitative evaluation framework for registration of multi-modal brain MRI." Proceeding of: International Society of Magnetic Resonance in Medicine (ISMRM). Toronto, Canada, 2015.

[Abstract] Rheault, F., J-C. Houde, and M. Descoteaux. "Real time interaction with millions of streamlines." Proceeding of: International Society of Magnetic Resonance in Medicine (ISMRM). Toronto, Canada, 2015.

[Abstract] St-Jean, S., G. Gilbert, and M. Descoteaux. "Connectome-like quality diffusion MRI in 13 minutes - Improving diffusion MRI spatial resolution with denoising." Proceeding of: International Society of Magnetic Resonance in Medicine (ISMRM). Toronto, Canada, 2015.

[Abstract] St-Onge, E., G. Girard, K. Whittingstall, and M. Descoteaux. "Surface tracking from the cortical mesh complements diffusion MRI fiber tracking near the cortex." Proceeding of: International Society of Magnetic Resonance in Medicine (ISMRM). Toronto, Canada, 2015.

[Abstract] Tax, C., D. Novikov, E. Garyfallidis, M. Viergever, M. Descoteaux, and A. Leemans. "LOCALIZING AND CHARACTERIZING SINGLE FIBER POPULATIONS THROUGHOUT THE BRAIN." Proceeding of: International Society of Magnetic Resonance in Medicine (ISMRM). Toronto, Canada, 2015.

[Abstract] Tremblay, P., N. Meunier, M-H. Tessier, A. Tremblay, M. Descoteaux, and A. Dick. "Behavioural and neural correlates of age-related speech perception deficits." Proceeding of: Human Brain Mapping (HBM). Honolulu, Hawaii, 2015.

[Abstract] Zucchelli, M., M. Descoteaux, and G. Menegaz. "Human brain tissue microstructure characterization using 3D-SHORE on the HCP data." Proceeding of: International Society of Magnetic Resonance in Medicine (ISMRM). Toronto, Canada, 2015.

 

2014

[Journal] Bernier, M., M. Chamberland, J-C. Houde, M. Descoteaux, and K. Whittingstall. "Using fMRI non-local means denoising to uncover activation in sub-cortical structures at 1.5 T for guided HARDI tractography." Frontiers in Human Neuroscience, 1-12, 2014. URL

[Journal] Brandao, P., C. Jovem, J. Brasil-Neto, C. Tomaz, M. Descoteaux, and N. Allem. "Congenital mirror movements: lack of decussation of pyramids." Brain, 1-4, 2014. DOI URL

[Journal] Chamberland, M., K. Whittinstall, D. Fortin, D. Mathieu, and M. Descoteaux. "Real-time multi-peak tractography for instantaneous connectivity display." Frontiers in Neuroinformatics, Methods article, 8 (59): 1-15, 2014. URL

[Journal] Daducci, A., E. Canales-Rodriguez, M. Descoteaux, E. Garyfallidis, Y. Gur, Y-C. Lin, M. Mani, S. Merlet, M. Paquette, A. Ramirez-Manzanares, M. Reisert, P. Rodrigues, F. Sepehrband, E. Caruyer, J. Choupan, R. Deriche, M. Jacob, G. Menegaz, V. Prckovska, M. Rivera, Y. Wiaux, and J-P. Thiran. "Quantitative comparison of reconstruction methods for intra-voxel fiber recovery from diffusion MRI." Transactions in Medical Imaging, 33 (2): 384-399, 2014. URL

[Journal] Garyfallidis, E., M. Brett, B. Amirbekian, A. Rokem, S. Van Der Walt, M. Descoteaux, and I. Nimmo-Smith. "Dipy, a library for the analysis of diffusion MRI data." Frontiers in Neuroinformatics, 1-18, 2014. URL

[Journal] Girard, G., K. Whittingstall, R. Deriche, and M. Descoteaux. "Towards quantitative connectivity analysis: reducing tractography biases." NeuroImage, 98 (1): 266-278, 2014. URL

[Journal] Paquette, M., S. Merlet, G. Gilbert, R. Deriche, and M. Descoteaux. "A comparison of sampling strategies and sparsifying transforms to improve Compressed Sensing DSI." Magnetic Resonance in Medecine, 73 (1): 401-416, 2014. URL

[Journal] Vigneau-Roy, N., M. Bernier, M. Descoteaux, and K. Whittingstall. "Regional variations in vascular density correlate with resting-state and task-evoked BOLD signal amplitude." Human Brain Mapping, 35 (5): 1906-1920, 2014. URL

[Journal] Whittingstall, K., M. Bernier, J-C. Houde, D. Fortin, and M. Descoteaux. "Structural network underlying visuospatial imagery in humans." Cortex, 56 (July): 85-98, 2014. URL

Descoteaux, M. and C. Poupon. "Diffusion-Weighted MRI." In Comprehensive Biomedical Physics, edited by D. Belvic and K. Belvic, 3 (6): 81-97. Elsevier, 2014. DOI

[Abstract] Caruyer, E., A. Daducci, M. Descoteaux, J-C. Houde, J-P. Thiran, and R. Verma. "Phantomas: a flexible software library to simulate diffusion MR phantoms." Proceeding of: International Society of Magnetic Resonance in Medicine (ISMRM). Milan, Italy. 6407, 2014.

[Abstract] Chamberland, M., M. Descoteaux, M. Bernier, D. Fortin, and K. Whittinstall. "Uncovering a visuospatial network at rest." Proceeding of: Organization of Human Brain Mapping (OHBM). Hamburg, Germany, 2014.

[Abstract] Garyfallidis, E., D. Wassermann, and M. Descoteaux. "Direct native-space fiber bundle alignment for group comparisons." Proceeding of: International Society of Magnetic Resonance in Medicine (ISMRM). Milan, Italy. 7796, 2014.

[Abstract] Garyfallidis, E., M. Zuchelli, J-C. Houde, and M. Descoteaux. "How to perform best ODF reconstruction from the Human Connectome Project sampling scheme?" Proceeding of: International Society of Magnetic Resonance in Medicine (ISMRM). Milan, Italy. 6838, 2014.

[Abstract] Garyfallidis, E., A. Rokem, B. Amirbekian, S. van der Walt, M. Zucchelli, J-O. Ocegueda-Gonzalez, S. St-Jean, G. Girard, M. Paquette, I. Nimmo-Smith, M. Brett, and M. Descoteaux. "The new methods available in Dipy 0.7.0+ that you should know about." Proceeding of: Organization of Human Brain Mapping (OHBM). Hamburg, Germany, 2014.

[Abstract] Tucholka, A., J. Ghaziri, J-C. Houde, G. Girard, M. Descoteaux, P. Rainville, and D. Nguyen. "The cortico-cortical structural connectivity of the human insula." Proceeding of: Organization of Human Brain Mapping (OHBM), 2014.

[Abstract] Girard, G., K. Whittingstall, R. Deriche, and M. Descoteaux. "Choosing Tractography Parameters to Improve Connectivity Mapping." Proceeding of: International Society of Magnetic Resonance in Medicine (ISMRM). Milan, Italy. 4227, 2014.

[Abstract] Girard, G., K. Whittingstall, R. Deriche, and M. Descoteaux. "Connectivity directionally-encoded color map: a streamline-based color mapping." Proceeding of: Organization of Human Brain Mapping (OHBM). Hamburg, Germany, 2014.

[Abstract] Houde, J-C., E. Caruyer, A. Daducci, and M. Descoteaux. "How should tractography go forward? A Tractometer evaluation of local reconstruction and tracking." Proceeding of: International Society of Magnetic Resonance in Medicine (ISMRM). 6470, 2014.

[Abstract] Paquette, M., S. Merlet, R. Deriche, and M. Descoteaux. "DSI 101: Better ODFs for free!" Proceeding of: International Society of Magnetic Resonance in Medicine (ISMRM). 7018, 2014.

[Abstract] Renauld, E., M. Descoteaux, and K. Whittinstall. "An EEG/MRI-dMRI Study: Structural properties of the thalamus and its influence on human alpha waves." Proceeding of: Organization of Human Brain Mapping (OHBM). Hamburg, Germany, 2014.

[Abstract] St-Jean, S., P. Coupé, and M. Descoteaux. "Non Local Spatial and Angular Matching : a new denoising technique for diffusion MRI." Proceeding of: International Society of Magnetic Resonance in Medicine (ISMRM). 758, 2014.

[Abstract] Zuchelli, M., E. Garyfallidis, M. Paquette, S. Merlet, G. Menegaz, and M. Descoteaux. "Comparison between discrete and continuous propagator indices from Cartesian q-space DSI sampling." Proceeding of: International Society of Magnetic Resonance in Medicine (ISMRM). 6762, 2014.

 

2013

[Journal] Côté, M-A., G. Girard, A. Boré, E. Garyfallidis, J-C. Houde, and M. Descoteaux. "Tractometer: Towards Validation of Tractography Pipelines." Medical Image Analysis, 17 (7): 844-857, 2013. URL

[Journal] Coupé, P., J. Manjòn, M. Chamberland, M. Descoteaux, and B. Hiba. "Collaborative patch-based super-resolution for diffusion-weighted images." NeuroImage, 83 (December): 245-261, 2013. URL

[Journal] Gramfort, A., C. Poupon, and M. Descoteaux. "Denoising and fast diffusion imaging with physically constrained sparse dictionary learning." Medical Image Analysis, 18 (1): 36-49, 2013. URL

[Journal] Laforce, R., M. Roy, M. Descoteaux, C. Berthelot, and J-P. Bouchard. "Neurocognitive deficits and diffusion MR imaging abnormalities in a case of adult-onset autosomal dominant leukodystrophy." Translational Neuroscience, 4 (4): 513-515, 2013. URL

[Journal] Roy, M., S. Nugent, S. Tremblay, M. Descoteaux, J-F. Beaudoin, L. Tremblay, R. Lecomte, and S. Cunnane. "A dual tracer PET-MRI protocol for the quantitative measure of regional brain energy substrates uptake in the rat." Journal of Visualized Experiments (82): e50761, 1-9, 2013. URL

Descoteaux, M. and C. Poupon. "Diffusion-Weighted MRI." In Comprehensive Biomedical Physics, edited by D. Belvic and K. Belvic, 3 (6): 81-97. Elsevier, 2014. DOI

[Abstract] Chamberland, M. and M. Descoteaux. "Explore the brain white matter networks in real-time: Multi-sticks fiber tracking." Proceeding of: International Society of Magnetic Resonance in Medicine (ISMRM). 2137, 2013.

[Abstract] Garyfallidis, E., S. St-Jean, M. Paquette, P. Coupé, and M. Descoteaux. "Constrained spherical deconvolution on signal and ODF values." Proceeding of: ISBI HARDI Reconstruction Challenge. 16, 2013.

[Abstract] Garyfallidis, E., S. St-Jean, M. Paquette, P. Coupé, and M. Descoteaux. "Deconvolution enhanced Generalized Q-Sampling 2 and DSI deconvolution." Proceeding of: ISBI HARDI Reconstruction Challenge. 17, 2013.

[Abstract] Girard, G. and M. Descoteaux. "Online Filtering Tractography: Tracking with anatomical priors." Proceeding of: International Society of Magnetic Resonance in Medicine (ISMRM). 775, 2013.

[Abstract] Laforce, R., M. Roy, J-P. Bouchard, M. Descoteaux, C. Berthelot, M. Brisson, and R. Bouchard. "A case of young-onset dementia with confluent white matter changes: adult-onset autosomal dominant leukodystrophy due to chromosome 5Q23 ." Proceeding of: 8th International Congress on Vascular Dementia - ICVD. Athens, Greece, 2013.

[Abstract] Merlet, S., M. Paquette, R. Deriche, and M. Descoteaux. "Compressive Sensing DSI." Proceeding of: ISBI HARDI Reconstruction Challenge. 10, 2013.

[Abstract] Nolze Charron, G., C. Presseau, M. Descoteaux, D. Lorrain, T. Fulop, and C. Bocti. "White matter hyperintensities in the cholinergic tracts and cognition: a HARDI tractography study." Proceeding of: 6th Congress of the International Society of Vascular Behavioural and Cognitive Disorders , 2013.

[Abstract] Paquette, M., E. Garyfallidis, S. St-Jean, P. Coupé, and M. Descoteaux. "Particle Swarm Optimization in Multi-Tensor Imaging." Proceeding of: ISBI HARDI Reconstruction Challenge. 15, 2013.

[Abstract] Paquette, M. and M. Descoteaux. "A Separable Approximation to DSI Deconvolution." Proceeding of: International Society of Magnetic Resonance in Medicine (ISMRM). 2121, 2013.

 

2012

[Journal] Descoteaux, M.. "De l'estimation locale par imagerie q-ball à la tractographie des croisements de fibres." Technique et science informatiques (TSI), 31 (3): 375-396, 2012. DOI

[Journal] Fortin, D., C. Aubin-Lemay, A. Boré, G. Girard, J-C. Houde, K. Whittingstall, and M. Descoteaux. "Tractography in the study of the human brain : a neurosurgical perspective." Canadian Journal of Neurosurgical Sciences (CJNS), 39 (6): 747-756, 2012. DOI

[Journal] Roy, M., S. Nugent, J. Tremblay-Mercier, S. Tremblay, A. Courchesne-Loyer, J-F. Beaudoin, L. Tremblay, M. Descoteaux, R. Lecomte, and S. C. Cunnane. "The ketogenic diet increases brain glucose and ketone uptake in aged rats: A dual tracer PET and volumetric MRI study." Brain Research, 1488, 14-23, 2012. URL

[Proceedings] Côté, M-A., A. Boré, G. Girard, J-C. Houde, and M. Descoteaux. "Tractometer : Online evaluation system for tractography." Paper presented at Medical Image Computing and Computer Assisted Intervention (MICCAI). October. Nice, France. 698-705. LNCS , 7510, 2012.

[Proceedings] Giot, R., C. Charrier, and M. Descoteaux. "Local Water Diffusion Phenomenon Clustering From High Angular Resolution Diffusion Imaging (HARDI)." Paper presented at 21st International Conference on Pattern Recognition (ICPR). November. Tsukuba, Japan, 2012.

[Proceedings] Girard, G. and M. Descoteaux. "Anatomical Tissue Probability Priors for Tractography." Paper presented at Computationnal diffusion MRI (CDMRI) workshop held at MICCAI. October 5th. Nice, France. 1-12, 2012.

[Proceedings] Girard, G., M. Chamberland, J-C. Houde, D. Fortin, and M. Descoteaux. "Neurosurgical tracking at the Sherbrooke Connectivity Imaging Lab (SCIL)." Paper presented at MICCAI 2012 DTI Tractography Challenge. October 1st. Nice, France. 1-18, 2012.

[Proceedings] Gramfort, A., C. Poupon, and M. Descoteaux. "Sparse DSI : Learning DSI structure for denoising and fast imaging." Paper presented at Medical Image Computing and Computer Assisted Intervention (MICCAI). October. Nice, France. 288-296. LNCS 7511, 2012.

[Proceedings] Merlet, S., A-C. Philppe, R. Deriche, and M. Descoteaux. "Tractography via the Ensemble Average Propagator in diffusion MRI." Paper presented at Medical Image Computing and Computer Assisted Intervention (MICCAI). October. Nice, France. LNCS 7511, 2012.

[Proceedings] Brion, V., O. Riff, M. Descoteaux, J-F. Mangin, D. Le Bihan, C. Poupon, and F. Poupon. "The parallel Kalman Filter: An efficient tool to deal with real-time non central Chi noise of HARDI data." Paper presented at International Symposium in Biomedical Imaging (ISBI). Barcelona, Spain, 2012.

[Abstract] Brion, V., O. Riff, M. Descoteaux, J-F. Mangin, D. Le Bihan, C. Poupon, and F. Poupon. "The Parallel Kalman Filter: an efficient tool to deal with real-time non central Chi noise correction." Proceeding of: International Society of Magnetic Resonance in Medicine (ISMRM). Melbourne, Australia, 2012.

[Abstract] Chamberland, M., D. Fortin, and M. Descoteaux. "Real-time fiber tractography : Interactive parameter tuning for neurosurgical interventions." Proceeding of: Human Brain Mapping (HBM). June. Beijing, China, 2012.

[Abstract] Descoteaux, M. and A. Boré. "Testing classical single-shell HARDI techniques." Proceeding of: ISBI 2012 HARDI reconstruction workshop. May. Barcelona, Spain, 2012.

[Abstract] Merlet, S., M. Paquette, R. Deriche, and M. Descoteaux. "Ensemble Average Propagator Reconstruction via Compressed Sensing: Discrete or Continuous Bases? ." Proceeding of: International Society of Magnetic Resonance in Medicine (ISMRM). Melbourne, Australia, 2012.

[Abstract] Merlet, S., R. Deriche, K. Whittingstall, and M. Descoteaux. "Diffusion and multiple orientations from 1.5 MR systems with limited gradient tables." Proceeding of: International Society of Magnetic Resonance in Medicine (ISMRM). Melbourne, Australia, 2012.

[Abstract] Paquette, M. and M. Descoteaux. "Sparse l1-l1 Multi-Tensor Imaging at the price of DTI." Proceeding of: ISBI 2012 HARDI reconstruction workshop. May. Barcelona, Spain, 2012.

[Abstract] Tricot, B., M. Descoteaux, M. Lepage, O. Lesur, L. Tremblay, F. Chagnon, and A. Lalande. "Improving the evaluation of cardiac function in rats at 7T by using non-local means filtering." Proceeding of: ESMRMB. Lisbone, Portugal, 2012.

[Abstract] Vigneau-Roy, N., M. Bernier, M. Descoteaux, and K. Whittingstall. "Link between function and structure in the resting-state brain : an fMRI and VBM study." Proceeding of: Human Brain Mapping (HBM). June. Beijing, China, 2012.

[ResearchReport] Aubin-Lemay, C., D. Fortin, K. Whittingstall, A. Boré, G. Girard, M-A. Côté, M. Descoteaux, and J-C. Houde. Étude de faisceaux de la matière blanche à l’aide de l’imagerie par tenseur de diffusion et des aires de Brodmann. Rapport de recherche 36, Sherbrooke, QC, Canada, 2012.

 

2011

[Journal] Cohen-Adad, J., M. Descoteaux, and L. Wald. "Boostrap Assessment of HARDI data for Q-ball reconstruction." Journal of Magnetic Resonance Imaging, 33 (5): 1194-1208, 2011.

[Journal] Descoteaux, M., R. Deriche, D. Le Bihan, J-F. Mangin, and C. Poupon. "Multiple q-shell diffusion propagator imaging." Medical Image Analysis, 15 (4): 603-621, 2011.

[Journal] Fillard, P., M. Descoteaux, A. Goh, S. Gouttard, B. Jeurissen, J. Malcolm, A. Ramirez-Manzanares, M. Resiert, K. Sakaie, F. Tensaouti, T. Yo, J-F. Mangin, and C. Poupon. "Quantitative Evaluation of 10 Tractography Algorithms on a Realistic Diffusion MR Phantom." NeuroImage, 56 (1): 220-234, 2011.

[Journal] Guevara, P., C. Poupon, D. Rivière, Y. Cointepas, M. Descoteaux, B. Thirion, and J-F. Mangin. "Robust Clustering of Massive Tractography Datasets." NeuroImage, 54 (3): 1975-1993, 2011.

[Journal] Sharman, M., J. Cohen-Adad, M. Descoteaux, A. Messé, H. Benali, and S. Lehéricy. "Impact of Outliers in DTI and QBI - Clinical implications and correction strategies." Journal of Magnetic Resonance Imaging, 33 (6): 1491-1502, 2011.

Prckovska, V., M. Descoteaux, C. Poupon, B. Haar Romeny, and A. Vilanova. "Classification study of DTI and HARDI anisotropy measures for HARDI data simplification." In Mathematics and Visualization,, Springer Verlag, 2011.

[Abstract] Bernier, M., M. Lepage, R. Lecomte, L. Tremblay, L. Doré-Savard, and M. Descoteaux. "Combining parallel multiresolution and PCA initialization for a fully automatic PET-MRI registration." Proceeding of: International Society of Magnetic Resonance in Medicine (ISMRM). May. Montreal, Canada, 2011.

[Abstract] Brion, V., O. Riff, I. Kezele, M. Descoteaux, D. Le Bihan, J-F. Mangin, C. Poupon, and F. Poupon. "Real-time Rician noise correction applied to real-time HARDI and HYDI." Proceeding of: International Society of Magnetic Resonance in Medicine (ISMRM). May. Montreal, Canada, 2011.

[Abstract] Descoteaux, M., D. Fortin, and K. Whittingstall. "DTI/fMRI fusion at 1.5T confirms robust relationship between structural and functional connectivity in a glioma patient." Proceeding of: ISMRM Workshop On Mapping Functional Networks For Brain Surgery. September. Milan, Italy, 2011.

[Abstract] Saint-Amant, E. and M. Descoteaux. "Sparsity Characterisation of the Diffusion Propagator." Proceeding of: International Society of Magnetic Resonance in Medicine (ISMRM). May. Montreal, Canada, 2011.

[Abstract] Tucholka, A., M. Descoteaux, D. Nguyen, and S. Lippé. "White matter connectivity of the human insula." Proceeding of: Human Brain Mapping (HBM). June. Québec, Canada, 2011.

[Abstract] Vaillancourt, O., A. Boré, G. Girard, and M. Descoteaux. "A Fiber Navigator for Neurosurgical Planning." Proceeding of: Human Brain Mapping (HBM). June. Québec, Canada, 2011.

[ResearchReport] Saint-Amant, E. and M. Descoteaux. Sparsity Characterization of the Diffusion Propagator. Research report 35, Sherbrooke, QC, Canada, 2011.

 

2010

[Journal] Kezele, I., M. Descoteaux, C. Poupon, F. Poupon, and J-F. Mangin. "Spherical wavelet transform for ODF sharpening." Medical Image Analysis, 14 (3): 332-342, 2010.

[Proceedings] Brun, C., M. Descoteaux, and N. Lepore. "A Multivariate Group-wise Genetic Analysis of White Matter Integrity using Orientation Distribution Functions." Paper presented at MICCAI. Beijing, China, 2010.

[Proceedings] Cohen-Adad, J., J. McNab, T. Benner, M. Descoteaux, A. Mareyam, V. Wedeen, and L. Wald. "Improving high-resolution Q-Ball imaging with a head insert gradient: Bootstrap and SNR analysis.", 2010.

[Proceedings] Guevara, P., C. Poupon, D. Rivière, Y. Cointepas, L. Marrakchi, M. Descoteaux, P. Fillard, B. Thirion, and J-F. Mangin. "Inference of a HARDI Fiber Bundle Atlas Using a Two-Level Clustering Strategy." Paper presented at MICCAI. September. Beijing, China. 550-557, 2010.

[Proceedings] Vaillancourt, O., A. Boré, G. Girard, and M. Descoteaux. "A Fiber Navigator for Neurosurgical Planning (NeuroPlanningNavigator)." Paper presented at IEEE VIsualization. November. Utah, USA, 2010.

[Abstract] Descoteaux, M., G. Koay, P. Basser, and R. Deriche. "Analytical Q-Ball Imaging with Optimal λ-Regularization." Proceeding of: International Society of Magnetic Resonance in Medecine (ISMRM). Stockholm, Sweden, 2010.

[Abstract] Poupon, C., L. Laribière, G. Tournier, J. Bernard, D. Fournier, P. Fillard, M. Descoteaux, and J-F. Mangin. "A diffusion hardware phantom looking like a coronal brain slice." Proceeding of: International Society of Magnetic Resonance in Medecine (ISMRM). Stockholm, Sweden, 2010.

[Abstract] Prckovska, V., A. Vilanova, C. Poupon, B. Haar Romeny, and M. Descoteaux. "Classification of non- Gaussian diffusion profiles for HARDI data simplification." Proceeding of: International Society of Magnetic Resonance in Medecine (ISMRM). Stockholm, Sweden, 2010.

[Abstract] Sharman, M., J. Cohen-Adad, M. Descoteaux, A. Messé, H. Benali, and S. Lehéricy. "Impact of Outliers in DTI and QBI - Clinical Implications and Correction Strategies." Proceeding of: International Society of Magnetic Resonance in Medecine (ISMRM). Stockholm, Sweden, 2010.

[ResearchReport] Côté, M-A., G. Girard, S. Wang, and M. Descoteaux. White matter fiber representation and segmentation using zero-crossing wavelets and string matching. Research report 32, Computer Science department, Université de Sherbrooke, Septembre, 2010.

 

2009

[Journal] Delmaire, C., M. Vidailhet, D. Wassermann, M. Descoteaux, R. Valabregue, F. Bourdin, C. Lenglet, S. Sangla, A. Terrier, R. Deriche, and S. Lehéricy. "Diffusion Abnormalities in the Primary Sensorimotor Pathways in Writer's Cramp." Archives of Neurology, 66 (4): 502-508, 2009.

[Journal] Deriche, R., J. Calder, and M. Descoteaux. "Optimal Real-Time Q-Ball Imaging Using Regularized Kalman Filtering with Incremental Orientation Sets." Medical Image Analysis, 13 (4): 564-579, 2009.

[Journal] Descoteaux, M., R. Deriche, T. Knosche, and A. Anwander. "Deterministic and probabilistic tractography based on complex fibre orientation distributions." IEEE transactions on medical imaging, 28, 269-286, 2009. URL

[Journal] Lenglet, C., J. Campbell, M. Descoteaux, G. Haro, P. Savadjiev, D. Wassermann, A. Anwander, R. Deriche, G. Pike, G. Sapiro, K. Siddiqi, and P. Thompson. "Mathematical Methods for Diffusion MRI Processing." NeuroImage, 45, 2009.

[Proceedings] Descoteaux, M., R. Deriche, D. Le Bihan, J-F. Mangin, and C. Poupon. "Diffusion propagator imaging : a novel technique for reconstructing the diffusion propagator from multiple shell acquisitions." Paper presented at International Society of Magnetic Resonance in Medicine. 46-49, 2009.

[Proceedings] Descoteaux, M., R. Deriche, and D. Le Bihan. "Diffusion Propagator Imaging : Using Laplace’s Equation and Multiple Shell Acquisitions to Reconstruct the Diffusion Propagator." Paper presented at Information Processing in Medical Imaging. 1-13, 2009.

[Proceedings] Péchaud, M., M. Descoteaux, and R. Keriven. "Brain connectivity using geodesics in HARDI." Paper presented at Medical image computing and computer-assisted intervention : MICCAI. London, United Kingdom. 482-489, 2009. URL

[Proceedings] Prckovska, V., A. Vilanova, B. Haar Romeny, C. Poupon, and M. Descoteaux. "Fast classification scheme for HARDI data simplification." Paper presented at Macedonian Society on Information and Communication Technologies. September. Ohrid, Macedonia, 2009.

[Proceedings] Yo, T-S., A. Anwander, M. Descoteaux, P. Fillard, C. Poupon, and T. Knosche. "Quantify Brain Connectivity: a Comparative Study of Tractography." Paper presented at Medical Image Computing and Computer-Assisted Intervention (MICCAI'09). 886-893, 2009.

[Abstract] Brion, V., I. Kezele, M. Descoteaux, J-F. Mangin, and C. Poupon. "Rician denoising dedicated to single- shell diffusion-weighted MR data using spherical harmonics : impact on fibre orientation distribution maps." Proceeding of: European Society of Magnetic Resonance in Medicine and Biology (ESMRMB). Antalya, Turkey, 2009.

[Abstract] Cohen-Adad, J., A. Ghosh, H. Leblond, M. Descoteaux, R. Deriche, H. Benali, and S. Rossignol. "Comparison of DTI and Q-Ball imaging metrics in a cat model of spinal cord injury." Proceeding of: Human Brain Mapping (HBM). San Francisco, 2009.

[Abstract] Cohen-Adad, J., H. Leblond, A. Ghosh, M. Descoteaux, R. Deriche, H. Benali, and S. Rossignol. "Evaluation of q-ball metrics for assessing the integrity of the injured spinal cord." Proceeding of: International Society of Magnetic Resonance in Medecine (ISMRM). Hawaii, USA. 638, 2009.

[Abstract] Descoteaux, M., K-H. Cho, Y-P. Chao, J-F. Mangin, C-P. Lin, and C. Poupon. "Diffusion Propagator Imaging (DPI) : an alternative to Diffusion Spectrum Imaging (DSI)." Proceeding of: International Society of Magnetic Resonance in Medecine (ISMRM). Hawaii, USA. 1391, 2009.

[Abstract] Descoteaux, M., N. Wiest-Daesslé, S. Prima, C. Barillot, R. Deriche, J-F. Mangin, and C. Poupon. "NEX or no NEX? A high angular resolution diffusion imaging study." Proceeding of: International Society of Magnetic Resonance in Medecine (ISMRM). Hawaii, USA. 1398, 2009.

[Abstract] Descoteaux, M., J. Calder, C. Poupon, F. Poupon, and R. Deriche. "Optimal real-time q-ball imaging with incremental recursive orientation sets." Proceeding of: International Society of Magnetic Resonance in Medecine (ISMRM). Hawaii, USA. 3539, 2009.

[Abstract] Ghosh, A., E. Tsigaridas, M. Descoteaux, and R. Deriche. "A Polynomial Based Approach to Extract Fiber Directions from the ODF, and its Experimental Validation." Proceeding of: International Society of Magnetic Resonance in Medecine (ISMRM). Hawaii, USA. 1389, 2009.

[Abstract] Kezele, I., M. Descoteaux, C. Poupon, P. Abrial, F. Poupon, and J-F. Mangin. "Multiresolution decomposition of HARDI and ODF profiles using spherical wavelets." Proceeding of: International Society of Magnetic Resonance in Medecine (ISMRM). Hawaii, USA. 1384, 2009.

[Abstract] Kezele, I., C. Poupon, M. Descoteaux, F. Poupon, and J-F. Mangin. "Importance of multiscale analysis in HARDI studies." Proceeding of: International Society of Magnetic Resonance in Medicine (ISMRM). April. Hawaii, USA. 1384, 2009.

[Abstract] Poupon, C., C. Wiggins, M. Descoteaux, J-F. Mangin, and D. Le Bihan. "Millimeter analytical Q-ball fiber density function for a better separation of fiber populations at 7T." Proceeding of: International Society of Magnetic Resonance in Medecine (ISMRM). Hawaii, USA. 1400, 2009.

[Abstract] Yo, T., A. Anwander, M. Descoteaux, P. Fillard, C. Poupon, and T. Knoesche. "Comparison of quantitative connectivity measures derived from diffusion weighted images." Proceeding of: Human Brain Mapping (HBM). San Francisco, USA, 2009.

[ResearchReport] Deriche, R., J. Calder, and M. Descoteaux. Optimal Real-Time QBI using Regularized Kalman Filtering with Incremental Orientation Sets. Research report 6793, INRIA Sophia Antipolis - Méditerranée, 2009.

 

2008

[Journal] Cohen-Adad, J., M. Descoteaux, S. Rossignol, R. Hoge, R. Deriche, and H. Benali. "Detection of multiple pathways in the spinal cord using q-ball imaging." NeuroImage, 42 (2): 739-749, 2008.

[Journal] Descoteaux, M., D. Collins, and K. Siddiqi. "A geometric flow for segmenting vasculature in proton-density weighted MRI." Medical Image Analysis, 4, 12, 497-513, 2008. URL

[Journal] Descoteaux, M. and R. Deriche. "High Angular Resolution Diffusion MRI Segmentation Using Region-Based Statistical Surface Evolution." Journal of Mathematical Imaging and Vision, 2, 33, 239-252, 2008. URL

[Journal] Descoteaux, M. and R. Deriche. "Image Reconstruction and Processing of High Angular Resolution Diffusion Imaging." SPIE Newsroom, Figure 1, 2-5, 2008.

[Journal] Descoteaux, M. and R. Deriche. "Mapping neuronal fiber crossings in the human brain." SPIE Newsroom, 1-4, 2008. URL

[Journal] Savadjiev, P., J. Campbell, M. Descoteaux, R. Deriche, G. Pike, and K. Siddiqi. "Labeling of ambiguous sub-voxel fibre bundle configurations in high angular resolution diffusion MRI." NeuroImage, 41 (1): 58-68, 2008.

[Journal] Wassermann, D., M. Descoteaux, and R. Deriche. "Diffusion Maps Clustering for Magnetic Resonance Q-Ball Imaging Segmentation." International Journal on Biomedical Imaging, special issue on Recent Advances in Neuroimaging Methodology, 2008, 2008.

Descoteaux, M. and R. Deriche. "From Local Q-Ball Estimation to Fibre Crossing Tractography." In Biomedical Image Analysis, edited by N. Paragios, Springer, 2008.

[Proceedings] Cohen-Adad, J., M. Descoteaux, S. Rossignol, R. Hoge, R. Deriche, and H. Benali. "Detection of Multiple Pathways in the Spinal Cord White Matter Using Q-Ball Imaging." 1380-1383, 2008.

[Proceedings] Descoteaux, M., N. Wiest-Daesslé, S. Prima, C. Barillot, and R. Deriche. "Impact of Rician Adapted Non-Local Means Filtering on HARDI." Paper presented at Medical Image Computing and Computer-Assisted Intervention (MICCAI). 122-130, 2008. URL

[Proceedings] Ghosh, A., M. Descoteaux, and R. Deriche. "Riemannian Framework for Estimating Symmetric Positive Definite 4th Order Diffusion Tensors." Paper presented at Medical Image Computing and Computer-Assisted Intervention (MICCAI). 858-865, 2008.

[Proceedings] Ghosh, A., E. Tsigaridas, M. Descoteaux, P. Comon, B. Mourain, and R. Deriche. "A polynomial based approach to extract the maxima of an antipodally symmetric spherical function and its application to extract directions from the Orientation Distribution Function in Diffusion MRI." Paper presented at Computational Diffusion MRI workshop held during the MICCAI conference. New York, USA, 2008.

[Proceedings] Ghosh, A., E. Tsigaridas, M. Descoteaux, P. Comon, B. Mourrain, and R. Deriche. "Using tensors and polynomials system solvers to follow fibers in the brain." Paper presented at NumAn workshop. Kalamata, Greece, 2008.

[Abstract] Christine, D., M. Vidailhet, M. Descoteaux, D. Wassermann, F. Bourdain, C. Lenglet, S. Sangla, A. Terrier, R. Deriche, and S. Lehéricy. "Diffusion Tensor Imaging of White Matter Abnormalities in Patients with Writer’s Cramp." Proceeding of: International Society of Magnetic Resonance in Medecine (ISMRM). Toronto, Canada. 2161, 2008.

[Abstract] Cohen-Adad, J., M. Descoteaux, R. Deriche, S. Rossignol, R. Hoge, and H. Benali. "Q-Ball Imaging of the Spinal Cord." Proceeding of: International Society of Magnetic Resonance in Medecine (ISMRM). Toronto, Canada. 569, 2008.

[Abstract] Cohen-Adad, J., M. Descoteaux, G. Barrière, R. Hoge, R. Deriche, H. Benali, and S. Rossignol. "Characterization of the healthy and injured spinal cord using q-ball imaging." Proceeding of: Pathogenesis and Mechanisms of White Matter Injury workshop. Krakow, Poland, 2008.

[Abstract] Ghosh, A., M. Descoteaux, and R. Deriche. "4th Order Diffusion Tensor Estimation and Application." Proceeding of: International Society of Magnetic Resonance in Medecine (ISMRM). Toronto, Canada. 3321, 2008.

[Abstract] Wiggins, C., D. Le Bihan, T. Feiweier, M. Descoteaux, J-F. Mangin, and C. Poupon. "Millimeter Analytical Q-Ball Imaging at 7T." Proceeding of: High Field Systems and Applications : "What’s Special about 7T+?". Rome, Italia, 2008.

 

2007

[Journal] Descoteaux, M., E. Angelino, S. Fitzgibbons, and R. Deriche. "Regularized, fast, and robust analytical Q-ball imaging." Magnetic Resonance in Medicine, 58 (3): 497-510, 2007. URL

[Journal] Reinersten, I., M. Descoteaux, K. Siddiqi, and D. Collins. "Validation of vessel-based registration for correction of brain shift." Medical Image Analysis, 11 (4): 374-388, 2007.

[Proceedings] Deriche, R. and M. Descoteaux. "Splitting Tracking Through Crossing Fibers: Multidirectional Q-Ball Tracking." Paper presented at 4th IEEE International Symposium on Biomedical Imaging: From Nano to Macro (ISBI'07). April. Arlington, Virginia, USA. 756-759, 2007.

[Proceedings] Descoteaux, M., R. Deriche, and C. Lenglet. "Diffusion Tensor Sharpening Improves White Matter Tractography." Paper presented at SPIE Medical Imaging. San Diego, California, USA, 2007.

[Proceedings] Descoteaux, M. and R. Deriche. "Segmentation of Q-Ball Images Using Statistical Surface Evolution." Paper presented at Medical Image Computing and Computer-Assisted Intervention (MICCAI). Brisbane, Australia. Springer, 769-776, 2007.

[Proceedings] Descoteaux, M., P. Savadjiev, J. Campbell, B. Pike, K. Siddiqi, and R. Deriche. "Validation and Comparison of Analytical Q-Ball Imaging Methods." Paper presented at 4th IEEE International Symposium on Biomedical Imaging: From Nano to Macro (ISBI'07). April. Arlington, Virginia, USA. 1084-1087, 2007.

[Proceedings] Wassermann, D., M. Descoteaux, and R. Deriche. "Diffusion Maps Segmentation of Magnetic Resonance Q-Ball Imaging." Paper presented at Mathematical Methods in Biomedical Image Analysis (MMBIA) workshop held during ICCV. Rio, Brazil, 2007.

[Abstract] Anwander, A., M. Descoteaux, and R. Deriche. "Probabilistic Q-Ball Tractography Solves Crossings of Callosal Fibers." Proceeding of: Human Brain Mapping. June. The Organization for Human Brain Mapping, 2007.

[Abstract] Descoteaux, M. and R. Deriche. "Sharpening improves clinically feasible q-ball imaging." Proceeding of: International Society of Magnetic Resonance in Medecine (ISMRM). Berlin, Germnay. 906, 2007.

[Abstract] Descoteaux, M., R. Deriche, P. Savadjiev, J. Campbell, G. Pike, and K. Siddiqi. "Analytic ODF Estima- tion and Validation in Q-Ball Imaging." Proceeding of: Human Brain Mapping (HBM). Florence, Italy, 2007.

[Abstract] Savadjiev, P., J. Campbell, M. Descoteaux, R. Deriche, G. Pike, and K. Siddiqi. "Disambiguation of Complex Subvoxel Fibre Configurations in High Angular Resolution Fibre Tractography." Proceeding of: International Society of Magnetic Resonance in Medecine (ISMRM). Berlin, Germnay. 1477, 2007.

[ResearchReport] Descoteaux, M., R. Deriche, and A. Anwander. Deterministic and Probabilistic Q-Ball Tractography: from Diffusion to Sharp Fiber Distributions. Research report 6273, INRIA Sophia Antipolis, 2007.

[ResearchReport] Descoteaux, M. and R. Deriche. Q-Ball Images Segmentation Using Region-Based Statistical Surface Evolution. Report number 6257, INRIA Sophia Antipolis, 2007.

[ResearchReport] Wassermann, D., M. Descoteaux, and R. Deriche. Recovering cerebral white matter structures with Spectral Clustering of Diffusion MRI Data. Research report 6351, INRIA Sophia Antipolis - Méditerranée, November, 2007.

 

2006

[Journal] Descoteaux, M., E. Angelino, S. Fitzgibbons, and R. Deriche. "Apparent diffusion coefficients from high angular resolution diffusion imaging: estimation and applications." Magnetic resonance in medicine, 56 (2): 395-410, 2006. URL

[Journal] Descoteaux, M., M. Audette, K. Chinzei, and K. Siddiqi. "Bone enhancement filtering: application to sinus bone segmentation and simulation of pituitary surgery." Computer aided surgery : official journal of the International Society for Computer Aided Surgery, 11 (5): 247-255, 2006. URL

[Proceedings] Descoteaux, M., E. Angelino, S. Fitzgibbons, and R. Deriche. "A Fast and Robust ODF Estimation Algorithm in Q-Ball Imaging." Paper presented at Third IEEE International Symposium on Biomedical Imaging: from Nano to Macro. apr. Arlington, Virginia, USA. 81-84, 2006.

 

2005 or older

[Proceedings] Descoteaux, M., M. Audette, K. Chinzei, and K. Siddiqi. "Bone enhancement filtering : application to sinus bone segmentation and simulation of pituitary surgery." Paper presented at Medical Image Computing and Computer-Assisted Intervention (MICCAI). September. Palm Springs, USA. Springer, 9-16, 2005.

[ResearchReport] Descoteaux, M., E. Angelino, S. Fitzgibbons, and R. Deriche. A Linear and Regularized ODF Estimation Algorithm to Recover Multiple Fibers in Q-Ball Imaging. Research report 5768, NRIA Sophia Antipolis, November, 2005.

[ResearchReport] Descoteaux, M., E. Angelino, S. Fitzgibbons, and R. Deriche. Apparent Diffusion Coefficients from High Angular Resolution Diffusion Images: Estimation and Applications. INRIA Sophia Antipolis, 2005.

[Proceedings] Descoteaux, M., L. Collins, and K. Siddiqi. "Geometric Flows for Segmenting Vasculature in MRI: Theory and Validation." Paper presented at Medical Image Computing and Computer-Assisted Intervention (MICCAI). September. Saint-Malo, France. 500-507, 2004.

[Proceedings] Descoteaux, M., L. Collins, and K. Siddiqi. "A Multi-Scale Geometric Flow for Segmenting Vasculature in MRI." Paper presented at Mathematical Methods in Biomedical Image Analysis (MMBIA) workshop held during ECCV. Prague, Czech Republic, 2004.

[Proceedings] Reinertsen, I., M. Descoteaux, S. Drouin, K. Siddiqi, and L. Collins. "Vessel Driven Correction of Brain Shift." Paper presented at Medical Image Computing and Computer-Assisted Intervention (MICCAI). September. Saint-Malo, France. 208-216, 2004.